About
Search
Advanced Search
Genomes
Predict
About us
S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
212457-212806
(+)
cobalamin
212871-214767 (+)
btuB
Vitamin B12 transporter BtuB (Cobalamin receptor) (Outer membrane cobalamin translocator)
Pecwa_0198
Operon
DOOR ID:
628571
Pecwa_0198
(btuB)
,
Pecwa_0199
View Structure
2
248755-248908
(-)
TPP
246700-248641 (-)
Pecwa_0220
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
Pecwa_0220
Operon
DOOR ID:
628577
Pecwa_0215
(thiH)
,
Pecwa_0216
(thiG)
,
Pecwa_0217,
Pecwa_0218,
Pecwa_0219,
Pecwa_0220
View Structure
3
1099494-1099693
(+)
FMN
1099820-1100474 (+)
ribB
3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)
Pecwa_1018
Single gene
DOOR ID:
2712012
Pecwa_1018
(ribB)
View Structure
4
1410816-1410912
(+)
TPP
1410949-1411744 (+)
Pecwa_1300
Hydroxyethylthiazole kinase (0) (4-methyl-5-beta-hydroxyethylthiazole kinase) (TH kinase) (Thz kinase)
Pecwa_1300
Operon
DOOR ID:
628789
Pecwa_1300,
Pecwa_1301
View Structure
5
2406535-2406725
(-)
yybP-ykoY
2405935-2406508 (-)
Pecwa_2215
Putative manganese efflux pump MntP
Pecwa_2215
Single gene
DOOR ID:
2712520
Pecwa_2215
View Structure
6
2460406-2460501
(+)
glycine
2460522-2461149 (+)
Pecwa_2271
Pecwa_2271
Single gene
DOOR ID:
2712550
Pecwa_2271
View Structure
7
2935561-2935608
(-)
mini-ykkC
2931938-2935541 (-)
Pecwa_2680
Pecwa_2680
Single gene
DOOR ID:
2712738
Pecwa_2680
View Structure
8
2939936-2940037
(-)
ykkC-yxkD
2938817-2939876 (-)
Pecwa_2686
ABC transporter periplasmic binding protein; urea carboxylase region
Pecwa_2686
Operon
DOOR ID:
629031
Pecwa_2681,
Pecwa_2682,
Pecwa_2683,
Pecwa_2684,
Pecwa_2685,
Pecwa_2686
View Structure
9
3212874-3213022
(-)
MOCO
3211343-3211862 (-)
Pecwa_2951
Molybdenum cofactor biosynthesis protein B
Pecwa_2951
Operon
DOOR ID:
629067
Pecwa_2948
(moaE)
,
Pecwa_2949
(moaD)
,
Pecwa_2950
(moaC)
,
Pecwa_2951,
Pecwa_2952
(moaA)
View Structure
10
4204804-4204900
(+)
TPP
4204947-4205964 (+)
tbpA
Thiamine ABC transporter; periplasmic binding protein
Pecwa_3808
Operon
DOOR ID:
629234
Pecwa_3808
(tbpA)
,
Pecwa_3809
(thiP)
,
Pecwa_3810
(thiQ)
View Structure
11
4360928-4361120
(+)
lysine
4361235-4362612 (+)
Pecwa_3947
Aspartokinase
Pecwa_3947
Single gene
DOOR ID:
2713258
Pecwa_3947
View Structure
Genome:
Pectobacterium wasabiae WPP163
(
NC_013421.1
);
Phylum:
Gammaproteobacteria
a:12:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_013421.1";i:2;s:31:"Pectobacterium wasabiae WPP163 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:13:"212457-212806";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:13:"212871-214767";i:10;s:1:"+";i:11;s:4:"btuB";i:12;s:89:"Vitamin B12 transporter BtuB (Cobalamin receptor) (Outer membrane cobalamin translocator)";i:13;s:10:"Pecwa_0198";i:14;s:6:"Operon";i:15;s:6:"628571";i:16;s:27:"Pecwa_0198(btuB);Pecwa_0199";i:17;s:26:"ion transport [GO:0006811]";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_013421.1";i:2;s:31:"Pectobacterium wasabiae WPP163 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:13:"248755-248908";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:13:"246700-248641";i:10;s:1:"-";i:11;s:10:"Pecwa_0220";i:12;s:176:"Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)";i:13;s:10:"Pecwa_0220";i:14;s:6:"Operon";i:15;s:6:"628577";i:16;s:77:"Pecwa_0215(thiH);Pecwa_0216(thiG);Pecwa_0217;Pecwa_0218;Pecwa_0219;Pecwa_0220";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_013421.1";i:2;s:31:"Pectobacterium wasabiae WPP163 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"1099494-1099693";i:6;s:1:"+";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"1099820-1100474";i:10;s:1:"+";i:11;s:4:"ribB";i:12;s:65:"3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)";i:13;s:10:"Pecwa_1018";i:14;s:11:"Single gene";i:15;s:7:"2712012";i:16;s:16:"Pecwa_1018(ribB)";i:17;s:44:"riboflavin biosynthetic process [GO:0009231]";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_013421.1";i:2;s:31:"Pectobacterium wasabiae WPP163 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"1410816-1410912";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"1410949-1411744";i:10;s:1:"+";i:11;s:10:"Pecwa_1300";i:12;s:102:"Hydroxyethylthiazole kinase (0) (4-methyl-5-beta-hydroxyethylthiazole kinase) (TH kinase) (Thz kinase)";i:13;s:10:"Pecwa_1300";i:14;s:6:"Operon";i:15;s:6:"628789";i:16;s:21:"Pecwa_1300;Pecwa_1301";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_013421.1";i:2;s:31:"Pectobacterium wasabiae WPP163 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"2406535-2406725";i:6;s:1:"-";i:7;s:9:"yybP-ykoY";i:8;s:0:"";i:9;s:15:"2405935-2406508";i:10;s:1:"-";i:11;s:10:"Pecwa_2215";i:12;s:35:"Putative manganese efflux pump MntP";i:13;s:10:"Pecwa_2215";i:14;s:11:"Single gene";i:15;s:7:"2712520";i:16;s:10:"Pecwa_2215";i:17;s:0:"";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_013421.1";i:2;s:31:"Pectobacterium wasabiae WPP163 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"2460406-2460501";i:6;s:1:"+";i:7;s:7:"glycine";i:8;s:0:"";i:9;s:15:"2460522-2461149";i:10;s:1:"+";i:11;s:10:"Pecwa_2271";i:12;s:0:"";i:13;s:10:"Pecwa_2271";i:14;s:11:"Single gene";i:15;s:7:"2712550";i:16;s:10:"Pecwa_2271";i:17;s:0:"";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_013421.1";i:2;s:31:"Pectobacterium wasabiae WPP163 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"2935561-2935608";i:6;s:1:"-";i:7;s:9:"mini-ykkC";i:8;s:0:"";i:9;s:15:"2931938-2935541";i:10;s:1:"-";i:11;s:10:"Pecwa_2680";i:12;s:0:"";i:13;s:10:"Pecwa_2680";i:14;s:11:"Single gene";i:15;s:7:"2712738";i:16;s:10:"Pecwa_2680";i:17;s:0:"";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_013421.1";i:2;s:31:"Pectobacterium wasabiae WPP163 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"2939936-2940037";i:6;s:1:"-";i:7;s:9:"ykkC-yxkD";i:8;s:0:"";i:9;s:15:"2938817-2939876";i:10;s:1:"-";i:11;s:10:"Pecwa_2686";i:12;s:68:"ABC transporter periplasmic binding protein; urea carboxylase region";i:13;s:10:"Pecwa_2686";i:14;s:6:"Operon";i:15;s:6:"629031";i:16;s:65:"Pecwa_2681;Pecwa_2682;Pecwa_2683;Pecwa_2684;Pecwa_2685;Pecwa_2686";i:17;s:0:"";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_013421.1";i:2;s:31:"Pectobacterium wasabiae WPP163 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"3212874-3213022";i:6;s:1:"-";i:7;s:4:"MOCO";i:8;s:0:"";i:9;s:15:"3211343-3211862";i:10;s:1:"-";i:11;s:10:"Pecwa_2951";i:12;s:42:"Molybdenum cofactor biosynthesis protein B";i:13;s:10:"Pecwa_2951";i:14;s:6:"Operon";i:15;s:6:"629067";i:16;s:78:"Pecwa_2948(moaE);Pecwa_2949(moaD);Pecwa_2950(moaC);Pecwa_2951;Pecwa_2952(moaA)";i:17;s:59:"Mo-molybdopterin cofactor biosynthetic process [GO:0006777]";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_013421.1";i:2;s:31:"Pectobacterium wasabiae WPP163 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"4204804-4204900";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"4204947-4205964";i:10;s:1:"+";i:11;s:4:"tbpA";i:12;s:53:"Thiamine ABC transporter; periplasmic binding protein";i:13;s:10:"Pecwa_3808";i:14;s:6:"Operon";i:15;s:6:"629234";i:16;s:50:"Pecwa_3808(tbpA);Pecwa_3809(thiP);Pecwa_3810(thiQ)";i:17;s:31:"thiamine transport [GO:0015888]";i:18;s:15:"View Structure ";}i:11;a:19:{i:0;i:11;i:1;s:11:"NC_013421.1";i:2;s:31:"Pectobacterium wasabiae WPP163 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"4360928-4361120";i:6;s:1:"+";i:7;s:6:"lysine";i:8;s:0:"";i:9;s:15:"4361235-4362612";i:10;s:1:"+";i:11;s:10:"Pecwa_3947";i:12;s:14:"Aspartokinase ";i:13;s:10:"Pecwa_3947";i:14;s:11:"Single gene";i:15;s:7:"2713258";i:16;s:10:"Pecwa_3947";i:17;s:105:"lysine biosynthetic process via diaminopimelate [GO:0009089]; threonine biosynthetic process [GO:0009088]";i:18;s:15:"View Structure ";}}
