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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
166445-166616
(+)
glmS
166741-168544 (+)
GYMC61_0155
GYMC61_0155
Single gene
DOOR ID:
2709546
GYMC61_0155
View Structure
2
218778-218866
(+)
glycine
219053-220148 (+)
gcvT
GYMC61_0214
Operon
DOOR ID:
627306
GYMC61_0214
(gcvT)
,
GYMC61_0215,
GYMC61_0216
View Structure
3
398372-398504
(+)
FMN
398711-399854 (+)
GYMC61_0385
GYMC61_0385
Operon
DOOR ID:
627335
GYMC61_0385,
GYMC61_0386,
GYMC61_0387,
GYMC61_0388
(ribH)
View Structure
4
428670-428869
(+)
cobalamin
429009-429966 (+)
GYMC61_0416
GYMC61_0416
Operon
DOOR ID:
627343
GYMC61_0416,
GYMC61_0417,
GYMC61_0418,
GYMC61_0419
(cobD)
,
GYMC61_0420,
GYMC61_0421,
GYMC61_0422,
GYMC61_0423,
GYMC61_0424,
GYMC61_0425,
GYMC61_0426,
GYMC61_0427
View Structure
5
647244-647358
(+)
SAM
647487-648699 (+)
GYMC61_0659
GYMC61_0659
Single gene
DOOR ID:
2709730
GYMC61_0659
View Structure
6
807437-807499
(+)
fluoride
807544-807934 (+)
GYMC61_0814
GYMC61_0814
Operon
DOOR ID:
627413
GYMC61_0814,
GYMC61_0815
View Structure
7
1068297-1068437
(+)
ydaO-yuaA
1068541-1070377 (+)
GYMC61_1068
GYMC61_1068
Single gene
DOOR ID:
2709872
GYMC61_1068
View Structure
8
1126211-1126312
(-)
purine
1124784-1126110 (-)
GYMC61_1115
GYMC61_1115
Single gene
DOOR ID:
2709891
GYMC61_1115
View Structure
9
1127995-1128096
(-)
purine
1126400-1127933 (-)
guaA
GYMC61_1116
Single gene
DOOR ID:
2709892
GYMC61_1116
(guaA)
View Structure
10
1140396-1140497
(+)
purine
1140607-1141096 (+)
GYMC61_1129
GYMC61_1129
Operon
DOOR ID:
627484
GYMC61_1129,
GYMC61_1130,
GYMC61_1131,
GYMC61_1132,
GYMC61_1133,
GYMC61_1134,
GYMC61_1135,
GYMC61_1136,
GYMC61_1137,
GYMC61_1138
(purN)
,
GYMC61_1139
(purH)
,
GYMC61_1140
View Structure
11
1274172-1274285
(+)
TPP
1274456-1276145 (+)
GYMC61_1249
GYMC61_1249
Single gene
DOOR ID:
2709932
GYMC61_1249
View Structure
12
1321353-1321457
(-)
SAM
1320519-1321227 (-)
GYMC61_1294
GYMC61_1294
Single gene
DOOR ID:
2709946
GYMC61_1294
View Structure
13
1426325-1426428
(+)
ykkC-yxkD
1426486-1426807 (+)
GYMC61_1398
GYMC61_1398
Single gene
DOOR ID:
2710009
GYMC61_1398
View Structure
14
1439360-1439467
(+)
TPP
1439573-1440257 (+)
GYMC61_1410
GYMC61_1410
Operon
DOOR ID:
627538
GYMC61_1410,
GYMC61_1411,
GYMC61_1412,
GYMC61_1413,
GYMC61_1414,
GYMC61_1415,
GYMC61_1416,
GYMC61_1417
(thiG)
,
GYMC61_1418
View Structure
15
1560952-1561054
(-)
SAM
1559032-1560880 (-)
GYMC61_1524
GYMC61_1524
Operon
DOOR ID:
627556
GYMC61_1523,
GYMC61_1524
View Structure
16
1684827-1684937
(+)
SAM
1685138-1686242 (+)
GYMC61_1667
GYMC61_1667
Operon
DOOR ID:
627584
GYMC61_1667,
GYMC61_1668
View Structure
17
1722938-1723133
(+)
cobalamin
1723262-1725545 (+)
GYMC61_1699
GYMC61_1699
Operon
DOOR ID:
627589
GYMC61_1699,
GYMC61_1700
View Structure
18
1767551-1767719
(-)
SAM
1766221-1767412 (-)
mtnK
GYMC61_1742
Operon
DOOR ID:
627597
GYMC61_1738,
GYMC61_1739,
GYMC61_1740,
GYMC61_1741
(mtnA)
,
GYMC61_1742
(mtnK)
View Structure
19
1769996-1770104
(+)
SAM
1770175-1771417 (+)
mtnW
GYMC61_1745
Operon
DOOR ID:
627598
GYMC61_1745
(mtnW)
,
GYMC61_1746
(mtnX)
,
GYMC61_1747
(mtnB)
View Structure
20
1779667-1779848
(-)
lysine
1778150-1779575 (-)
GYMC61_1754
GYMC61_1754
Single gene
DOOR ID:
2710167
GYMC61_1754
View Structure
21
1797290-1797335
(+)
PreQ1
1797406-1798081 (+)
GYMC61_1770
GYMC61_1770
Operon
DOOR ID:
627602
GYMC61_1770,
GYMC61_1771,
GYMC61_1772,
GYMC61_1773
View Structure
22
2173921-2174025
(+)
SAM
2174095-2174431 (+)
GYMC61_2153
GYMC61_2153
Operon
DOOR ID:
627674
GYMC61_2153,
GYMC61_2154
View Structure
23
2432023-2432124
(+)
purine
2432240-2432828 (+)
GYMC61_2387
GYMC61_2387
Operon
DOOR ID:
627722
GYMC61_2387,
GYMC61_2388
View Structure
24
2610426-2610558
(-)
FMN
2609684-2610269 (-)
GYMC61_2572
GYMC61_2572
Single gene
DOOR ID:
2710484
GYMC61_2572
View Structure
25
2653986-2654180
(-)
cobalamin
2653406-2653805 (-)
GYMC61_2621
GYMC61_2621
Operon
DOOR ID:
627763
GYMC61_2617,
GYMC61_2618,
GYMC61_2619,
GYMC61_2620,
GYMC61_2621
View Structure
26
3133536-3133645
(-)
SAM
3132419-3133448 (-)
GYMC61_3079
GYMC61_3079
Operon
DOOR ID:
627849
GYMC61_3077,
GYMC61_3078,
GYMC61_3079
View Structure
27
3234829-3234914
(+)
c-di-GMP-I
3234954-3235815 (+)
GYMC61_3183
GYMC61_3183
single gene
DOOR ID:
2710709
GYMC61_3183
View Structure
28
3336874-3336956
(-)
c-di-GMP-I
3334116-3335490 (+)
GYMC61_3275
GYMC61_3275
single gene
DOOR ID:
2710733
GYMC61_3275
View Structure
Genome:
Geobacillus sp. Y412MC61
(
NC_013411.1
);
Phylum:
Firmicutes
a:29:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_013411.1";i:2;s:25:"Geobacillus sp. Y412MC61 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"166445-166616";i:6;s:1:"+";i:7;s:4:"glmS";i:8;s:0:"";i:9;s:13:"166741-168544";i:10;s:1:"+";i:11;s:11:"GYMC61_0155";i:12;s:0:"";i:13;s:11:"GYMC61_0155";i:14;s:11:"Single gene";i:15;s:7:"2709546";i:16;s:11:"GYMC61_0155";i:17;s:0:"";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_013411.1";i:2;s:25:"Geobacillus sp. Y412MC61 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"218778-218866";i:6;s:1:"+";i:7;s:7:"glycine";i:8;s:0:"";i:9;s:13:"219053-220148";i:10;s:1:"+";i:11;s:4:"gcvT";i:12;s:0:"";i:13;s:11:"GYMC61_0214";i:14;s:6:"Operon";i:15;s:6:"627306";i:16;s:41:"GYMC61_0214(gcvT);GYMC61_0215;GYMC61_0216";i:17;s:0:"";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_013411.1";i:2;s:25:"Geobacillus sp. Y412MC61 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"398372-398504";i:6;s:1:"+";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:13:"398711-399854";i:10;s:1:"+";i:11;s:11:"GYMC61_0385";i:12;s:0:"";i:13;s:11:"GYMC61_0385";i:14;s:6:"Operon";i:15;s:6:"627335";i:16;s:53:"GYMC61_0385;GYMC61_0386;GYMC61_0387;GYMC61_0388(ribH)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_013411.1";i:2;s:25:"Geobacillus sp. Y412MC61 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"428670-428869";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:13:"429009-429966";i:10;s:1:"+";i:11;s:11:"GYMC61_0416";i:12;s:0:"";i:13;s:11:"GYMC61_0416";i:14;s:6:"Operon";i:15;s:6:"627343";i:16;s:149:"GYMC61_0416;GYMC61_0417;GYMC61_0418;GYMC61_0419(cobD);GYMC61_0420;GYMC61_0421;GYMC61_0422;GYMC61_0423;GYMC61_0424;GYMC61_0425;GYMC61_0426;GYMC61_0427";i:17;s:0:"";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_013411.1";i:2;s:25:"Geobacillus sp. Y412MC61 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"647244-647358";i:6;s:1:"+";i:7;s:3:"SAM";i:8;s:0:"";i:9;s:13:"647487-648699";i:10;s:1:"+";i:11;s:11:"GYMC61_0659";i:12;s:0:"";i:13;s:11:"GYMC61_0659";i:14;s:11:"Single gene";i:15;s:7:"2709730";i:16;s:11:"GYMC61_0659";i:17;s:0:"";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_013411.1";i:2;s:25:"Geobacillus sp. Y412MC61 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"807437-807499";i:6;s:1:"+";i:7;s:8:"fluoride";i:8;s:0:"";i:9;s:13:"807544-807934";i:10;s:1:"+";i:11;s:11:"GYMC61_0814";i:12;s:0:"";i:13;s:11:"GYMC61_0814";i:14;s:6:"Operon";i:15;s:6:"627413";i:16;s:23:"GYMC61_0814;GYMC61_0815";i:17;s:0:"";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_013411.1";i:2;s:25:"Geobacillus sp. Y412MC61 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1068297-1068437";i:6;s:1:"+";i:7;s:9:"ydaO-yuaA";i:8;s:0:"";i:9;s:15:"1068541-1070377";i:10;s:1:"+";i:11;s:11:"GYMC61_1068";i:12;s:0:"";i:13;s:11:"GYMC61_1068";i:14;s:11:"Single gene";i:15;s:7:"2709872";i:16;s:11:"GYMC61_1068";i:17;s:0:"";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_013411.1";i:2;s:25:"Geobacillus sp. Y412MC61 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1126211-1126312";i:6;s:1:"-";i:7;s:6:"purine";i:8;s:0:"";i:9;s:15:"1124784-1126110";i:10;s:1:"-";i:11;s:11:"GYMC61_1115";i:12;s:0:"";i:13;s:11:"GYMC61_1115";i:14;s:11:"Single gene";i:15;s:7:"2709891";i:16;s:11:"GYMC61_1115";i:17;s:0:"";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_013411.1";i:2;s:25:"Geobacillus sp. Y412MC61 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1127995-1128096";i:6;s:1:"-";i:7;s:6:"purine";i:8;s:0:"";i:9;s:15:"1126400-1127933";i:10;s:1:"-";i:11;s:4:"guaA";i:12;s:0:"";i:13;s:11:"GYMC61_1116";i:14;s:11:"Single gene";i:15;s:7:"2709892";i:16;s:17:"GYMC61_1116(guaA)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_013411.1";i:2;s:25:"Geobacillus sp. Y412MC61 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1140396-1140497";i:6;s:1:"+";i:7;s:6:"purine";i:8;s:0:"";i:9;s:15:"1140607-1141096";i:10;s:1:"+";i:11;s:11:"GYMC61_1129";i:12;s:0:"";i:13;s:11:"GYMC61_1129";i:14;s:6:"Operon";i:15;s:6:"627484";i:16;s:155:"GYMC61_1129;GYMC61_1130;GYMC61_1131;GYMC61_1132;GYMC61_1133;GYMC61_1134;GYMC61_1135;GYMC61_1136;GYMC61_1137;GYMC61_1138(purN);GYMC61_1139(purH);GYMC61_1140";i:17;s:0:"";i:18;s:15:"View Structure ";}i:11;a:19:{i:0;i:11;i:1;s:11:"NC_013411.1";i:2;s:25:"Geobacillus sp. Y412MC61 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1274172-1274285";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"1274456-1276145";i:10;s:1:"+";i:11;s:11:"GYMC61_1249";i:12;s:0:"";i:13;s:11:"GYMC61_1249";i:14;s:11:"Single gene";i:15;s:7:"2709932";i:16;s:11:"GYMC61_1249";i:17;s:0:"";i:18;s:15:"View Structure ";}i:12;a:19:{i:0;i:12;i:1;s:11:"NC_013411.1";i:2;s:25:"Geobacillus sp. Y412MC61 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1321353-1321457";i:6;s:1:"-";i:7;s:3:"SAM";i:8;s:0:"";i:9;s:15:"1320519-1321227";i:10;s:1:"-";i:11;s:11:"GYMC61_1294";i:12;s:0:"";i:13;s:11:"GYMC61_1294";i:14;s:11:"Single gene";i:15;s:7:"2709946";i:16;s:11:"GYMC61_1294";i:17;s:0:"";i:18;s:15:"View Structure ";}i:13;a:19:{i:0;i:13;i:1;s:11:"NC_013411.1";i:2;s:25:"Geobacillus sp. Y412MC61 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1426325-1426428";i:6;s:1:"+";i:7;s:9:"ykkC-yxkD";i:8;s:0:"";i:9;s:15:"1426486-1426807";i:10;s:1:"+";i:11;s:11:"GYMC61_1398";i:12;s:0:"";i:13;s:11:"GYMC61_1398";i:14;s:11:"Single gene";i:15;s:7:"2710009";i:16;s:11:"GYMC61_1398";i:17;s:0:"";i:18;s:15:"View Structure ";}i:14;a:19:{i:0;i:14;i:1;s:11:"NC_013411.1";i:2;s:25:"Geobacillus sp. Y412MC61 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1439360-1439467";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"1439573-1440257";i:10;s:1:"+";i:11;s:11:"GYMC61_1410";i:12;s:0:"";i:13;s:11:"GYMC61_1410";i:14;s:6:"Operon";i:15;s:6:"627538";i:16;s:113:"GYMC61_1410;GYMC61_1411;GYMC61_1412;GYMC61_1413;GYMC61_1414;GYMC61_1415;GYMC61_1416;GYMC61_1417(thiG);GYMC61_1418";i:17;s:0:"";i:18;s:15:"View Structure ";}i:15;a:19:{i:0;i:15;i:1;s:11:"NC_013411.1";i:2;s:25:"Geobacillus sp. Y412MC61 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1560952-1561054";i:6;s:1:"-";i:7;s:3:"SAM";i:8;s:0:"";i:9;s:15:"1559032-1560880";i:10;s:1:"-";i:11;s:11:"GYMC61_1524";i:12;s:0:"";i:13;s:11:"GYMC61_1524";i:14;s:6:"Operon";i:15;s:6:"627556";i:16;s:23:"GYMC61_1523;GYMC61_1524";i:17;s:0:"";i:18;s:15:"View Structure ";}i:16;a:19:{i:0;i:16;i:1;s:11:"NC_013411.1";i:2;s:25:"Geobacillus sp. 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