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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
77267-77366
(-)
TPP
76252-77236 (-)
tbpA
Thiamin transporter subunit TbpA
ECO111_0070
Operon
DOOR ID:
625074
ECO111_0068
(thiQ)
,
ECO111_0069
(thiP)
,
ECO111_0070
(tbpA)
View Structure
2
897133-897277
(+)
MOCO
898275-898788 (+)
moaB
Molybdenum cofactor biosynthesis protein B
ECO111_0843
Operon
DOOR ID:
625225
ECO111_0842
(moaA)
,
ECO111_0843
(moaB)
,
ECO111_0844
(moaC)
,
ECO111_0845
(moaD)
,
ECO111_0846
(moaE)
View Structure
3
2327963-2328064
(+)
yybP-ykoY
2328194-2328761 (+)
yebN
Probable manganese efflux pump MntP
ECO111_2328
Single gene
DOOR ID:
2703238
ECO111_2328
(yebN)
View Structure
4
2753319-2753415
(-)
TPP
2752495-2753284 (-)
thiM
Hydroxyethylthiazole kinase (0) (4-methyl-5-beta-hydroxyethylthiazole kinase) (TH kinase) (Thz kinase)
ECO111_2820
Operon
DOOR ID:
625587
ECO111_2817
(yegW)
,
ECO111_2818
(yegX)
,
ECO111_2819
(thiD)
,
ECO111_2820
(thiM)
View Structure
5
3846536-3846684
(-)
FMN
3845778-3846432 (-)
ribB
3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)
ECO111_3865
Single gene
DOOR ID:
2703693
ECO111_3865
(ribB)
View Structure
6
4850669-4850859
(+)
cobalamin
4850923-4852768 (+)
btuB
Vitamin B12 transporter BtuB (Cobalamin receptor) (Outer membrane cobalamin translocator)
ECO111_4791
Operon
DOOR ID:
625980
ECO111_4791
(btuB)
,
ECO111_4792
(murI)
View Structure
7
4883377-4883477
(-)
TPP
4881400-4883296 (-)
thiC
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
ECO111_4811
Operon
DOOR ID:
625985
ECO111_4806
(thiH)
,
ECO111_4807
(thiG)
,
ECO111_4808
(thiS)
,
ECO111_4809
(thiF)
,
ECO111_4810
(thiE)
,
ECO111_4811
(thiC)
View Structure
8
4928990-4929186
(-)
lysine
4927548-4928898 (-)
lysC
Aspartokinase
ECO111_4846
Single gene
DOOR ID:
2704022
ECO111_4846
(lysC)
View Structure
9
5156593-5156639
(-)
mini-ykkC
5156257-5156575 (-)
sugE
ECO111_5063
Single gene
DOOR ID:
2704096
ECO111_5063
(sugE)
View Structure
10
5221310-5221425
(+)
Mg sensor
5221518-5224215 (+)
mgtA
Magnesium transporter MgtA
ECO111_5127
Single gene
DOOR ID:
2704134
ECO111_5127
(mgtA)
View Structure
Genome:
Escherichia coli O111:H- str. 11128
(
NC_013364.1
);
Phylum:
Gammaproteobacteria
a:11:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_013364.1";i:2;s:35:"Escherichia coli O111:H- str. 11128";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:11:"77267-77366";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:11:"76252-77236";i:10;s:1:"-";i:11;s:4:"tbpA";i:12;s:32:"Thiamin transporter subunit TbpA";i:13;s:11:"ECO111_0070";i:14;s:6:"Operon";i:15;s:6:"625074";i:16;s:53:"ECO111_0068(thiQ);ECO111_0069(thiP);ECO111_0070(tbpA)";i:17;s:69:"thiamine transport [GO:0015888]; transmembrane transport [GO:0055085]";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_013364.1";i:2;s:35:"Escherichia coli O111:H- str. 11128";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:13:"897133-897277";i:6;s:1:"+";i:7;s:4:"MOCO";i:8;s:0:"";i:9;s:13:"898275-898788";i:10;s:1:"+";i:11;s:4:"moaB";i:12;s:42:"Molybdenum cofactor biosynthesis protein B";i:13;s:11:"ECO111_0843";i:14;s:6:"Operon";i:15;s:6:"625225";i:16;s:89:"ECO111_0842(moaA);ECO111_0843(moaB);ECO111_0844(moaC);ECO111_0845(moaD);ECO111_0846(moaE)";i:17;s:59:"Mo-molybdopterin cofactor biosynthetic process [GO:0006777]";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_013364.1";i:2;s:35:"Escherichia coli O111:H- str. 11128";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"2327963-2328064";i:6;s:1:"+";i:7;s:9:"yybP-ykoY";i:8;s:0:"";i:9;s:15:"2328194-2328761";i:10;s:1:"+";i:11;s:4:"yebN";i:12;s:35:"Probable manganese efflux pump MntP";i:13;s:11:"ECO111_2328";i:14;s:11:"Single gene";i:15;s:7:"2703238";i:16;s:17:"ECO111_2328(yebN)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_013364.1";i:2;s:35:"Escherichia coli O111:H- str. 11128";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"2753319-2753415";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"2752495-2753284";i:10;s:1:"-";i:11;s:4:"thiM";i:12;s:102:"Hydroxyethylthiazole kinase (0) (4-methyl-5-beta-hydroxyethylthiazole kinase) (TH kinase) (Thz kinase)";i:13;s:11:"ECO111_2820";i:14;s:6:"Operon";i:15;s:6:"625587";i:16;s:71:"ECO111_2817(yegW);ECO111_2818(yegX);ECO111_2819(thiD);ECO111_2820(thiM)";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_013364.1";i:2;s:35:"Escherichia coli O111:H- str. 11128";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"3846536-3846684";i:6;s:1:"-";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"3845778-3846432";i:10;s:1:"-";i:11;s:4:"ribB";i:12;s:65:"3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)";i:13;s:11:"ECO111_3865";i:14;s:11:"Single gene";i:15;s:7:"2703693";i:16;s:17:"ECO111_3865(ribB)";i:17;s:44:"riboflavin biosynthetic process [GO:0009231]";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_013364.1";i:2;s:35:"Escherichia coli O111:H- str. 11128";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"4850669-4850859";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"4850923-4852768";i:10;s:1:"+";i:11;s:4:"btuB";i:12;s:89:"Vitamin B12 transporter BtuB (Cobalamin receptor) (Outer membrane cobalamin translocator)";i:13;s:11:"ECO111_4791";i:14;s:6:"Operon";i:15;s:6:"625980";i:16;s:35:"ECO111_4791(btuB);ECO111_4792(murI)";i:17;s:26:"ion transport [GO:0006811]";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_013364.1";i:2;s:35:"Escherichia coli O111:H- str. 11128";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"4883377-4883477";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"4881400-4883296";i:10;s:1:"-";i:11;s:4:"thiC";i:12;s:176:"Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)";i:13;s:11:"ECO111_4811";i:14;s:6:"Operon";i:15;s:6:"625985";i:16;s:107:"ECO111_4806(thiH);ECO111_4807(thiG);ECO111_4808(thiS);ECO111_4809(thiF);ECO111_4810(thiE);ECO111_4811(thiC)";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_013364.1";i:2;s:35:"Escherichia coli O111:H- str. 11128";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"4928990-4929186";i:6;s:1:"-";i:7;s:6:"lysine";i:8;s:0:"";i:9;s:15:"4927548-4928898";i:10;s:1:"-";i:11;s:4:"lysC";i:12;s:14:"Aspartokinase ";i:13;s:11:"ECO111_4846";i:14;s:11:"Single gene";i:15;s:7:"2704022";i:16;s:17:"ECO111_4846(lysC)";i:17;s:105:"lysine biosynthetic process via diaminopimelate [GO:0009089]; threonine biosynthetic process [GO:0009088]";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_013364.1";i:2;s:35:"Escherichia coli O111:H- str. 11128";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"5156593-5156639";i:6;s:1:"-";i:7;s:9:"mini-ykkC";i:8;s:0:"";i:9;s:15:"5156257-5156575";i:10;s:1:"-";i:11;s:4:"sugE";i:12;s:0:"";i:13;s:11:"ECO111_5063";i:14;s:11:"Single gene";i:15;s:7:"2704096";i:16;s:17:"ECO111_5063(sugE)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_013364.1";i:2;s:35:"Escherichia coli O111:H- str. 11128";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"5221310-5221425";i:6;s:1:"+";i:7;s:9:"Mg sensor";i:8;s:0:"";i:9;s:15:"5221518-5224215";i:10;s:1:"+";i:11;s:4:"mgtA";i:12;s:26:"Magnesium transporter MgtA";i:13;s:11:"ECO111_5127";i:14;s:11:"Single gene";i:15;s:7:"2704134";i:16;s:17:"ECO111_5127(mgtA)";i:17;s:0:"";i:18;s:15:"View Structure ";}}