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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
77228-77327
(-)
TPP
76213-77197 (-)
tbpA
Thiamin transporter subunit TbpA
ECO103_0069
Operon
DOOR ID:
622579
ECO103_0067
(thiQ)
,
ECO103_0068
(thiP)
,
ECO103_0069
(tbpA)
View Structure
2
890872-891016
(+)
MOCO
892014-892527 (+)
moaB
Molybdenum cofactor biosynthesis protein B
ECO103_0817
Operon
DOOR ID:
622728
ECO103_0816
(moaA)
,
ECO103_0817
(moaB)
,
ECO103_0818
(moaC)
,
ECO103_0819
(moaD)
,
ECO103_0820
(moaE)
View Structure
3
2094648-2094749
(+)
yybP-ykoY
2094879-2095446 (+)
yebN
Probable manganese efflux pump MntP
ECO103_2011
Single gene
DOOR ID:
2698634
ECO103_2011
(yebN)
View Structure
4
2596393-2596489
(-)
TPP
2595569-2596358 (-)
thiM
Hydroxyethylthiazole kinase (0) (4-methyl-5-beta-hydroxyethylthiazole kinase) (TH kinase) (Thz kinase)
ECO103_2580
Operon
DOOR ID:
623058
ECO103_2577
(yegW)
,
ECO103_2578
(yegX)
,
ECO103_2579
(thiD)
,
ECO103_2580
(thiM)
View Structure
5
3795279-3795427
(-)
FMN
3794521-3795175 (-)
ribB
3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)
ECO103_3720
Single gene
DOOR ID:
2699146
ECO103_3720
(ribB)
View Structure
6
4873937-4874127
(+)
cobalamin
4874191-4876036 (+)
btuB
Vitamin B12 transporter BtuB (Cobalamin receptor) (Outer membrane cobalamin translocator)
ECO103_4724
Operon
DOOR ID:
623481
ECO103_4724
(btuB)
,
ECO103_4725
(murI)
View Structure
7
4905728-4905828
(-)
TPP
4903751-4905647 (-)
thiC
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
ECO103_4743
Operon
DOOR ID:
623486
ECO103_4738
(thiH)
,
ECO103_4739
(thiG)
,
ECO103_4740
(thiS)
,
ECO103_4741
(thiF)
,
ECO103_4742
(thiE)
,
ECO103_4743
(thiC)
View Structure
8
4945108-4945304
(-)
lysine
4943666-4945016 (-)
lysC
Aspartokinase
ECO103_4772
Single gene
DOOR ID:
2699511
ECO103_4772
(lysC)
View Structure
9
5135423-5135469
(+)
mini-ykkC
5135486-5135804 (+)
sugE
ECO103_4946
Single gene
DOOR ID:
2699590
ECO103_4946
(sugE)
View Structure
10
5232616-5232731
(+)
Mg sensor
5232824-5235521 (+)
mgtA
Magnesium transporter MgtA
ECO103_5038
Single gene
DOOR ID:
2699629
ECO103_5038
(mgtA)
View Structure
Genome:
Escherichia coli O103:H2 str. 12009
(
NC_013353.1
);
Phylum:
Gammaproteobacteria
a:11:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_013353.1";i:2;s:35:"Escherichia coli O103:H2 str. 12009";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:11:"77228-77327";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:11:"76213-77197";i:10;s:1:"-";i:11;s:4:"tbpA";i:12;s:32:"Thiamin transporter subunit TbpA";i:13;s:11:"ECO103_0069";i:14;s:6:"Operon";i:15;s:6:"622579";i:16;s:53:"ECO103_0067(thiQ);ECO103_0068(thiP);ECO103_0069(tbpA)";i:17;s:69:"thiamine transport [GO:0015888]; transmembrane transport [GO:0055085]";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_013353.1";i:2;s:35:"Escherichia coli O103:H2 str. 12009";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:13:"890872-891016";i:6;s:1:"+";i:7;s:4:"MOCO";i:8;s:0:"";i:9;s:13:"892014-892527";i:10;s:1:"+";i:11;s:4:"moaB";i:12;s:42:"Molybdenum cofactor biosynthesis protein B";i:13;s:11:"ECO103_0817";i:14;s:6:"Operon";i:15;s:6:"622728";i:16;s:89:"ECO103_0816(moaA);ECO103_0817(moaB);ECO103_0818(moaC);ECO103_0819(moaD);ECO103_0820(moaE)";i:17;s:59:"Mo-molybdopterin cofactor biosynthetic process [GO:0006777]";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_013353.1";i:2;s:35:"Escherichia coli O103:H2 str. 12009";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"2094648-2094749";i:6;s:1:"+";i:7;s:9:"yybP-ykoY";i:8;s:0:"";i:9;s:15:"2094879-2095446";i:10;s:1:"+";i:11;s:4:"yebN";i:12;s:35:"Probable manganese efflux pump MntP";i:13;s:11:"ECO103_2011";i:14;s:11:"Single gene";i:15;s:7:"2698634";i:16;s:17:"ECO103_2011(yebN)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_013353.1";i:2;s:35:"Escherichia coli O103:H2 str. 12009";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"2596393-2596489";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"2595569-2596358";i:10;s:1:"-";i:11;s:4:"thiM";i:12;s:102:"Hydroxyethylthiazole kinase (0) (4-methyl-5-beta-hydroxyethylthiazole kinase) (TH kinase) (Thz kinase)";i:13;s:11:"ECO103_2580";i:14;s:6:"Operon";i:15;s:6:"623058";i:16;s:71:"ECO103_2577(yegW);ECO103_2578(yegX);ECO103_2579(thiD);ECO103_2580(thiM)";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_013353.1";i:2;s:35:"Escherichia coli O103:H2 str. 12009";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"3795279-3795427";i:6;s:1:"-";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"3794521-3795175";i:10;s:1:"-";i:11;s:4:"ribB";i:12;s:65:"3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)";i:13;s:11:"ECO103_3720";i:14;s:11:"Single gene";i:15;s:7:"2699146";i:16;s:17:"ECO103_3720(ribB)";i:17;s:44:"riboflavin biosynthetic process [GO:0009231]";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_013353.1";i:2;s:35:"Escherichia coli O103:H2 str. 12009";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"4873937-4874127";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"4874191-4876036";i:10;s:1:"+";i:11;s:4:"btuB";i:12;s:89:"Vitamin B12 transporter BtuB (Cobalamin receptor) (Outer membrane cobalamin translocator)";i:13;s:11:"ECO103_4724";i:14;s:6:"Operon";i:15;s:6:"623481";i:16;s:35:"ECO103_4724(btuB);ECO103_4725(murI)";i:17;s:26:"ion transport [GO:0006811]";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_013353.1";i:2;s:35:"Escherichia coli O103:H2 str. 12009";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"4905728-4905828";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"4903751-4905647";i:10;s:1:"-";i:11;s:4:"thiC";i:12;s:176:"Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)";i:13;s:11:"ECO103_4743";i:14;s:6:"Operon";i:15;s:6:"623486";i:16;s:107:"ECO103_4738(thiH);ECO103_4739(thiG);ECO103_4740(thiS);ECO103_4741(thiF);ECO103_4742(thiE);ECO103_4743(thiC)";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_013353.1";i:2;s:35:"Escherichia coli O103:H2 str. 12009";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"4945108-4945304";i:6;s:1:"-";i:7;s:6:"lysine";i:8;s:0:"";i:9;s:15:"4943666-4945016";i:10;s:1:"-";i:11;s:4:"lysC";i:12;s:14:"Aspartokinase ";i:13;s:11:"ECO103_4772";i:14;s:11:"Single gene";i:15;s:7:"2699511";i:16;s:17:"ECO103_4772(lysC)";i:17;s:105:"lysine biosynthetic process via diaminopimelate [GO:0009089]; threonine biosynthetic process [GO:0009088]";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_013353.1";i:2;s:35:"Escherichia coli O103:H2 str. 12009";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"5135423-5135469";i:6;s:1:"+";i:7;s:9:"mini-ykkC";i:8;s:0:"";i:9;s:15:"5135486-5135804";i:10;s:1:"+";i:11;s:4:"sugE";i:12;s:0:"";i:13;s:11:"ECO103_4946";i:14;s:11:"Single gene";i:15;s:7:"2699590";i:16;s:17:"ECO103_4946(sugE)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_013353.1";i:2;s:35:"Escherichia coli O103:H2 str. 12009";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"5232616-5232731";i:6;s:1:"+";i:7;s:9:"Mg sensor";i:8;s:0:"";i:9;s:15:"5232824-5235521";i:10;s:1:"+";i:11;s:4:"mgtA";i:12;s:26:"Magnesium transporter MgtA";i:13;s:11:"ECO103_5038";i:14;s:11:"Single gene";i:15;s:7:"2699629";i:16;s:17:"ECO103_5038(mgtA)";i:17;s:0:"";i:18;s:15:"View Structure ";}}