Genome: Clostridium difficile CD196 (NC_013315.1); Phylum: Firmicutes
S.No.Riboswitch Location and StrandRiboswitch classDownstream gene location and StrandDownstream gene name/gene product descriptionLocus_tag of downstream geneSingle gene/within operon (According to DOOR database)Operon details (List of genes within operon and their Locus_tag)Predicted Structure
1 161242-161421 (+)glmS161474-163307 (+)glmS

Glutamine--fructose-6-phosphate aminotransferase [isomerizing] (6) (D-fructose-6-phosphate amidotransferase) (GFAT) (Glucosamine-6-phosphate synthase) (Hexosephosphate aminotransferase) (L-glutamine--D-fructose-6-phosphate amidotransferase)		CD196_0132Single gene

DOOR ID: 2695215		CD196_0132 (glmS) View Structure
2 172255-172358 (+)SAM172494-173688 (+)metE

S-adenosylmethionine synthase (AdoMet synthase) (MAT) (Methionine adenosyltransferase)		CD196_0142Single gene

DOOR ID: 2695220		CD196_0142 (metE) View Structure
3 194840-194957 (+)FMN195081-195687 (+)CD196_0159

Riboflavin transporter		CD196_0159Single gene

DOOR ID: 2695226		CD196_0159 View Structure
4 254387-254488 (+)purine254708-256244 (+)guaA

GMP synthase [glutamine-hydrolyzing] (GMP synthetase) (Glutamine amidotransferase)		CD196_0211Single gene

DOOR ID: 2695252		CD196_0211 (guaA) View Structure
5 310584-310674 (+)c-di-GMP-I311080-311398 (+)flgB

Flagellar basal-body rod protein		CD196_0261operon

DOOR ID: 621204		CD196_0261 (flgB),
CD196_0262 (flgC),
CD196_0263 (fliE),
CD196_0264 (fliF),
CD196_0265 (fliG),
CD196_0266 (fliH),
CD196_0267 (fliI),
CD196_0268 (fliJ),
CD196_0269 (fliK),
CD196_0270 (flgD),
CD196_0271 (flgE),
CD196_0272,
CD196_0273 (motA),
CD196_0274 (motB),
CD196_0275 (fliL),
CD196_0276,
CD196_0277 (fliP),
CD196_0278 (fliQ),
CD196_0279 (flhB),
CD196_0280 (flhA),
CD196_0281 (flhF),
CD196_0282 (fleN),
CD196_0283 (fliA),
CD196_0284		 View Structure
6 395077-395269 (+)cobalamin395457-396210 (+)cbiM

Cobalt transport protein CbiM (Energy-coupling factor transporter probable substrate-capture protein CbiM) (ECF transporter S component CbiM)		CD196_0343Operon

DOOR ID: 621216		CD196_0343 (cbiM),
CD196_0344 (cbiN),
CD196_0345 (cbiQ),
CD196_0346 (cbiO)		 View Structure
7 519848-519954 (+)ykkC-yxkD520023-520344 (+)sugE

Quaternary ammonium compound-resistance protein		CD196_0445Single gene

DOOR ID: 2695316		CD196_0445 (sugE) View Structure
8 704790-704866 (+)fluoride705130-706387 (+)CD196_0596

Putative chloride ion channel protein		CD196_0596Operon

DOOR ID: 621272		CD196_0596,
CD196_0597 (cdu2)		 View Structure
9 1222226-1222332 (+)SAM1222434-1223640 (+)hom1

Homoserine dehydrogenase (HDH) 		CD196_1025Single gene

DOOR ID: 2695551		CD196_1025 (hom1) View Structure
10 1512611-1512707 (-)c-di-GMP-I1512380-1512557 (-)CD196_1294

Uncharacterized protein		CD196_1294single gene

DOOR ID: 2695657		CD196_1294 View Structure
11 1585164-1585270 (+)SAM1585360-1586341 (+)metN

Methionine import ATP-binding protein MetN 		CD196_1362Operon

DOOR ID: 621425		CD196_1362 (metN),
CD196_1363 (metI),
CD196_1364 (metQ)		 View Structure
12 1771204-1771296 (+)TPP1771395-1772190 (+)thiD

Putative phosphomethylpyrimidine kinase		CD196_1522Operon

DOOR ID: 621454		CD196_1522 (thiD),
CD196_1523 (thiK),
CD196_1524 (thiE1)		 View Structure
13 1834101-1834206 (-)SAM1833190-1833988 (-)CD196_1576

Lipoprotein		CD196_1576Single gene

DOOR ID: 2695768		CD196_1576 View Structure
14 1835448-1835624 (+)lysine1835767-1837498 (+)CD196_1578

Putative Na+/H+ antiporter		CD196_1578Single gene

DOOR ID: 2695770		CD196_1578 View Structure
15 1838585-1838689 (+)glycine1838898-1841373 (+)CD196_1580

Multifunctional fusion protein [Includes: Aminomethyltransferase (Glycine cleavage system P-protein subunit 1) (Glycine decarboxylase subunit 1) (Glycine dehydrogenase (aminomethyl-transferring) subunit 1)]		CD196_1580Operon

DOOR ID: 621464		CD196_1580,
CD196_1581 (gcvPB)		 View Structure
16 1870833-1870876 (+)PreQ11870976-1871945 (+)iunH

Inosine-uridine preferring nucleoside hydrolase		CD196_1605Operon

DOOR ID: 621469		CD196_1605 (iunH),
CD196_1606,
CD196_1607		 View Structure
17 1887657-1887778 (-)FMN1886421-1887525 (-)ribD

Riboflavin biosynthesis protein RibD [Includes: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (DRAP deaminase) (93) (HTP reductase)]		CD196_1623Operon

DOOR ID: 621474		CD196_1622 (ribB),
CD196_1623 (ribD)		 View Structure
18 1890538-1890649 (+)TPP1890676-1892092 (+)thiC

Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)		CD196_1625Single gene

DOOR ID: 2695787		CD196_1625 (thiC) View Structure
19 2018049-2018151 (+)SAM2018260-2019526 (+)cysD

Putative O-acetylhomoserine sulfhydrylase		CD196_1744Operon

DOOR ID: 621500		CD196_1744 (cysD),
CD196_1745 (metA)		 View Structure
20 2143239-2143338 (-)TPP2142817-2143108 (-)CD196_1861

CD196_1861Operon

DOOR ID: 621524		CD196_1858,
CD196_1859,
CD196_1860,
CD196_1861		 View Structure
21 2143958-2144047 (+)c-di-GMP-I2144390-2144747 (-)CD196_1862

Putative transcriptional regulator		CD196_1862single gene

DOOR ID: 2695879		CD196_1862 View Structure
22 2156353-2156446 (-)c-di-GMP-I2155784-2156270 (-)CD196_1871

Uncharacterized protein		CD196_1871single gene

DOOR ID: 2695888		CD196_1871 View Structure
23 2157412-2157509 (+)c-di-GMP-I2157965-2158166 (+)cspC

Cold shock protein		CD196_1872single gene

DOOR ID: 2695889		CD196_1872 (cspC) View Structure
24 2209210-2209378 (-)lysine2207934-2209128 (-)lysC

Aspartokinase 		CD196_1918Operon

DOOR ID: 621531		CD196_1917 (lysA),
CD196_1918 (lysC)		 View Structure
25 2276336-2276438 (-)purine2274865-2276242 (-)CD196_1971

Putative xanthine/uracil permease		CD196_1971Single gene

DOOR ID: 2695942		CD196_1971 View Structure
26 2476388-2476476 (+)glycine2476665-2478033 (+)CD196_2131

Putative sodium:solute symporter		CD196_2131Single gene

DOOR ID: 2696029		CD196_2131 View Structure
27 2525006-2525107 (-)purine2524250-2524823 (-)xpt

Xanthine phosphoribosyltransferase (XPRTase) (2)		CD196_2173Operon

DOOR ID: 621580		CD196_2172 (tal1),
CD196_2173 (xpt)		 View Structure
28 2555970-2556080 (-)glycine2555494-2555866 (-)grdX

Putative glycine reductase complex component		CD196_2198Single gene

DOOR ID: 2696056		CD196_2198 (grdX) View Structure
29 2596277-2596371 (-)ykkC-yxkD2595508-2596213 (-)CD196_2235

CD196_2235Single gene

DOOR ID: 2696068		CD196_2235 View Structure
30 2958868-2958969 (+)purine2959041-2960385 (+)CD196_2545

Putative permease		CD196_2545Single gene

DOOR ID: 2696175		CD196_2545 View Structure
31 3096099-3096184 (-)c-di-GMP-I3090011-3095975 (-)CD196_2639

Putative exported protein		CD196_2639single gene

DOOR ID: 2696217		CD196_2639 View Structure
32 3136573-3136658 (-)c-di-GMP-I3135810-3136473 (-)CD196_2674

Putative exported protein		CD196_2674single gene

DOOR ID: 2696236		CD196_2674 View Structure
33 3139911-3139996 (-)c-di-GMP-II3136843-3139798 (-)CD196_2675

Putative collagen-binding protein		CD196_2675Single gene

DOOR ID: 2696237		CD196_2675 View Structure
34 3276182-3276363 (-)cobalamin3274823-3275954 (-)CD196_2788

Putative iron ABC transporter; substrate-binding protein		CD196_2788Single gene

DOOR ID: 2696280		CD196_2788 View Structure
35 3407424-3407603 (-)lysine3405888-3407280 (-)CD196_2891

Putative C4-dicarboxylate anaerobic carrier		CD196_2891Operon

DOOR ID: 621726		CD196_2890,
CD196_2891		 View Structure
36 3601525-3601699 (+)lysine3601871-3602873 (+)asd

Aspartate-semialdehyde dehydrogenase (ASA dehydrogenase) (ASADH) (1) (Aspartate-beta-semialdehyde dehydrogenase)		CD196_3038Operon

DOOR ID: 621764		CD196_3038 (asd),
CD196_3039 (dapA2),
CD196_3040 (dapB1)		 View Structure
37 3655773-3655856 (-)c-di-GMP-II3654515-3655193 (-)CD196_3082

Two-component response regulator		CD196_3082Operon

DOOR ID: 621769		CD196_3080,
CD196_3081,
CD196_3082		 View Structure
38 3690789-3690904 (+)FMN3691078-3692449 (+)CD196_3114

Probable transporter		CD196_3114Single gene

DOOR ID: 2696412		CD196_3114 View Structure
39 3750238-3750334 (+)c-di-GMP-I3751012-3751612 (+)CD196_3168

Uncharacterized protein		CD196_3168single gene

DOOR ID: 2696439		CD196_3168 View Structure
40 3811996-3812175 (-)cobalamin3810366-3811866 (-)cbiP

Cobyric acid synthase		CD196_3211Operon

DOOR ID: 621796		CD196_3195 (hemB),
CD196_3196 (hemD),
CD196_3197 (hemC),
CD196_3198 (cbiK),
CD196_3199 (cbiJ),
CD196_3200 (cbiH),
CD196_3201 (cbiG),
CD196_3202 (cbiF),
CD196_3203 (cbiT),
CD196_3204 (cbiE),
CD196_3205 (cbiD),
CD196_3206 (cbiC),
CD196_3207,
CD196_3208 (cobD),
CD196_3209 (cbiB),
CD196_3210 (cbiA),
CD196_3211 (cbiP)		 View Structure
41 3905812-3905897 (-)c-di-GMP-II3905128-3905650 (-)CD196_3304

Pilin		CD196_3304Single gene

DOOR ID: 2696480		CD196_3304 View Structure