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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
212786-212971
(+)
cobalamin
214823-215690 (+)
murI
Glutamate racemase
CTU_02020
Operon
DOOR ID:
620299
CTU_02010
(btuB)
,
CTU_02020
(murI)
View Structure
2
343914-344023
(-)
TPP
341895-343797 (-)
thiC
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
CTU_03050
Operon
DOOR ID:
620324
CTU_03000
(thiH)
,
CTU_03010
(thiG)
,
CTU_03020
(thiS)
,
CTU_03030
(thiF)
,
CTU_03040
(thiE)
,
CTU_03050
(thiC)
View Structure
3
755740-755841
(-)
TPP
754723-755644 (-)
thiB
Thiamine-binding periplasmic protein
CTU_07000
Operon
DOOR ID:
620410
CTU_06980
(thiQ)
,
CTU_06990
(thiP)
,
CTU_07000
(thiB)
View Structure
4
1459388-1459523
(+)
MOCO
1460521-1461034 (+)
moaB
Molybdenum cofactor biosynthesis protein B
CTU_13820
Operon
DOOR ID:
620545
CTU_13800,
CTU_13810
(moaA)
,
CTU_13820
(moaB)
,
CTU_13830
(moaC)
,
CTU_13840
(moaD)
,
CTU_13850
(moaE)
,
CTU_13860
(ybhL)
View Structure
5
2625555-2625726
(+)
yybP-ykoY
2626292-2627129 (-)
rrmA
Ribosomal RNA large subunit methyltransferase A (1)
CTU_25050
Single gene
DOOR ID:
2694428
CTU_25050
(rrmA)
View Structure
6
2901202-2901298
(-)
TPP
2900370-2901168 (-)
thiM
Hydroxyethylthiazole kinase (0) (4-methyl-5-beta-hydroxyethylthiazole kinase) (TH kinase) (Thz kinase)
CTU_27800
Operon
DOOR ID:
620816
CTU_27790
(thiD)
,
CTU_27800
(thiM)
View Structure
7
3668603-3668787
(-)
FMN
3667841-3668495 (-)
ribB
3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)
CTU_35180
Single gene
DOOR ID:
2694807
CTU_35180
(ribB)
View Structure
8
3858523-3858570
(-)
mini-ykkC
3858187-3858505 (-)
sugE
CTU_37060
Single gene
DOOR ID:
2694896
CTU_37060
(sugE)
View Structure
9
3946317-3946510
(+)
lysine
3946623-3947976 (+)
lysC
Aspartokinase
CTU_37900
Single gene
DOOR ID:
2694944
CTU_37900
(lysC)
View Structure
Genome:
Cronobacter turicensis z3032
(
NC_013282.2
);
Phylum:
Gammaproteobacteria
a:10:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_013282.2";i:2;s:29:"Cronobacter turicensis z3032 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:13:"212786-212971";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:13:"214823-215690";i:10;s:1:"+";i:11;s:4:"murI";i:12;s:19:"Glutamate racemase ";i:13;s:9:"CTU_02020";i:14;s:6:"Operon";i:15;s:6:"620299";i:16;s:31:"CTU_02010(btuB);CTU_02020(murI)";i:17;s:123:"cell wall organization [GO:0071555]; peptidoglycan biosynthetic process [GO:0009252]; regulation of cell shape [GO:0008360]";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_013282.2";i:2;s:29:"Cronobacter turicensis z3032 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:13:"343914-344023";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:13:"341895-343797";i:10;s:1:"-";i:11;s:4:"thiC";i:12;s:176:"Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)";i:13;s:9:"CTU_03050";i:14;s:6:"Operon";i:15;s:6:"620324";i:16;s:95:"CTU_03000(thiH);CTU_03010(thiG);CTU_03020(thiS);CTU_03030(thiF);CTU_03040(thiE);CTU_03050(thiC)";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_013282.2";i:2;s:29:"Cronobacter turicensis z3032 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:13:"755740-755841";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:13:"754723-755644";i:10;s:1:"-";i:11;s:4:"thiB";i:12;s:36:"Thiamine-binding periplasmic protein";i:13;s:9:"CTU_07000";i:14;s:6:"Operon";i:15;s:6:"620410";i:16;s:47:"CTU_06980(thiQ);CTU_06990(thiP);CTU_07000(thiB)";i:17;s:69:"thiamine transport [GO:0015888]; transmembrane transport [GO:0055085]";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_013282.2";i:2;s:29:"Cronobacter turicensis z3032 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"1459388-1459523";i:6;s:1:"+";i:7;s:4:"MOCO";i:8;s:0:"";i:9;s:15:"1460521-1461034";i:10;s:1:"+";i:11;s:4:"moaB";i:12;s:42:"Molybdenum cofactor biosynthesis protein B";i:13;s:9:"CTU_13820";i:14;s:6:"Operon";i:15;s:6:"620545";i:16;s:105:"CTU_13800;CTU_13810(moaA);CTU_13820(moaB);CTU_13830(moaC);CTU_13840(moaD);CTU_13850(moaE);CTU_13860(ybhL)";i:17;s:59:"Mo-molybdopterin cofactor biosynthetic process [GO:0006777]";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_013282.2";i:2;s:29:"Cronobacter turicensis z3032 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"2625555-2625726";i:6;s:1:"+";i:7;s:9:"yybP-ykoY";i:8;s:0:"";i:9;s:15:"2626292-2627129";i:10;s:1:"-";i:11;s:4:"rrmA";i:12;s:51:"Ribosomal RNA large subunit methyltransferase A (1)";i:13;s:9:"CTU_25050";i:14;s:11:"Single gene";i:15;s:7:"2694428";i:16;s:15:"CTU_25050(rrmA)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_013282.2";i:2;s:29:"Cronobacter turicensis z3032 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"2901202-2901298";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"2900370-2901168";i:10;s:1:"-";i:11;s:4:"thiM";i:12;s:102:"Hydroxyethylthiazole kinase (0) (4-methyl-5-beta-hydroxyethylthiazole kinase) (TH kinase) (Thz kinase)";i:13;s:9:"CTU_27800";i:14;s:6:"Operon";i:15;s:6:"620816";i:16;s:31:"CTU_27790(thiD);CTU_27800(thiM)";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_013282.2";i:2;s:29:"Cronobacter turicensis z3032 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"3668603-3668787";i:6;s:1:"-";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"3667841-3668495";i:10;s:1:"-";i:11;s:4:"ribB";i:12;s:65:"3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)";i:13;s:9:"CTU_35180";i:14;s:11:"Single gene";i:15;s:7:"2694807";i:16;s:15:"CTU_35180(ribB)";i:17;s:44:"riboflavin biosynthetic process [GO:0009231]";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_013282.2";i:2;s:29:"Cronobacter turicensis z3032 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"3858523-3858570";i:6;s:1:"-";i:7;s:9:"mini-ykkC";i:8;s:0:"";i:9;s:15:"3858187-3858505";i:10;s:1:"-";i:11;s:4:"sugE";i:12;s:0:"";i:13;s:9:"CTU_37060";i:14;s:11:"Single gene";i:15;s:7:"2694896";i:16;s:15:"CTU_37060(sugE)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_013282.2";i:2;s:29:"Cronobacter turicensis z3032 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"3946317-3946510";i:6;s:1:"+";i:7;s:6:"lysine";i:8;s:0:"";i:9;s:15:"3946623-3947976";i:10;s:1:"+";i:11;s:4:"lysC";i:12;s:14:"Aspartokinase ";i:13;s:9:"CTU_37900";i:14;s:11:"Single gene";i:15;s:7:"2694944";i:16;s:15:"CTU_37900(lysC)";i:17;s:105:"lysine biosynthetic process via diaminopimelate [GO:0009089]; threonine biosynthetic process [GO:0009088]";i:18;s:15:"View Structure ";}}
