RiboswitchDB

Genome: Candidatus Methylomirabilis oxyfera (NC_013260.1); Phylum: Bacteria candidate phyla

S.No.

Riboswitch Location and Strand

Riboswitch class

Downstream gene location and Strand

Downstream gene name/gene product description

Locus_tag of downstream gene

Single gene/within operon (According to DOOR database)

Operon details (List of genes within operon and their Locus_tag)

Predicted Structure

1

196197-196276 (-)

c-di-GMP-I

194099-196130 (-)

DAMO_0214

Uncharacterized protein

single gene

DOOR ID: 2692618

DAMO_0214

2

877760-877883 (+)

SAM

877958-878195 (+)

DAMO_1038

Operon

DOOR ID: 1310514

DAMO_1038,
DAMO_1039 (thrC)

3

1805372-1805657 (-)

cobalamin

1803333-1805343 (-)

DAMO_2083

Putative TonB-dependent outer membrane receptor for cobalamin and Fe transport

Operon

DOOR ID: 1310740

DAMO_2083,
DAMO_2084

4

1810000-1810281 (-)

cobalamin

1809844-1809931 (-)

DAMO_2091

Single gene

DOOR ID: 2693112

DAMO_2091

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