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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
174164-174247
(+)
cobalamin
174300-176418 (+)
Namu_0159
Magnesium chelatase
Namu_0159
Operon
DOOR ID:
619061
Namu_0159,
Namu_0160,
Namu_0161,
Namu_0162
View Structure
2
180816-180935
(+)
cobalamin
180968-181190 (+)
Namu_0163
Namu_0163
Operon
DOOR ID:
619062
Namu_0163,
Namu_0164,
Namu_0165,
Namu_0166
View Structure
3
864023-864137
(-)
SAM-IV
862523-863978 (-)
Namu_0783
Cysteine desulfurase
Namu_0783
Single gene
DOOR ID:
2690761
Namu_0783
View Structure
4
1415278-1415374
(-)
TPP
1412245-1413643 (+)
Namu_1287
Transposase IS116/IS110/IS902 family protein
Namu_1287
Single gene
DOOR ID:
2690942
Namu_1287
View Structure
5
1712765-1712905
(-)
SAM
1711461-1712751 (-)
Namu_1550
Threonine synthase
Namu_1550
Single gene
DOOR ID:
2691023
Namu_1550
View Structure
6
1835325-1835419
(-)
TPP
1833385-1834252 (-)
Namu_1668
Binding-protein-dependent transport systems inner membrane component
Namu_1668
Operon
DOOR ID:
619381
Namu_1667,
Namu_1668,
Namu_1669
View Structure
7
2571070-2571270
(+)
ydaO-yuaA
2571275-2572046 (+)
Namu_2328
Transglycosylase domain protein
Namu_2328
Single gene
DOOR ID:
2691370
Namu_2328
View Structure
8
3564486-3564650
(-)
ydaO-yuaA
3563129-3564470 (-)
Namu_3235
NLP/P60 protein
Namu_3235
Operon
DOOR ID:
619689
Namu_3234,
Namu_3235
View Structure
9
3567385-3567574
(-)
ydaO-yuaA
3566146-3567289 (-)
Namu_3237
NLP/P60 protein
Namu_3237
Single gene
DOOR ID:
2691683
Namu_3237
View Structure
10
4424240-4424343
(-)
glycine
4421297-4424162 (-)
Namu_4004
Glycine dehydrogenase (decarboxylating) (Glycine cleavage system P-protein) (Glycine decarboxylase) (Glycine dehydrogenase (aminomethyl-transferring))
Namu_4004
Single gene
DOOR ID:
2691974
Namu_4004
View Structure
11
4807101-4807212
(-)
TPP
4806030-4806906 (-)
Namu_4321
NUDIX hydrolase
Namu_4321
Single gene
DOOR ID:
2692080
Namu_4321
View Structure
12
4813193-4813302
(+)
SAM-IV
4813525-4814761 (+)
Namu_4327
Putative transcriptional regulator; GntR family
Namu_4327
Single gene
DOOR ID:
2692086
Namu_4327
View Structure
13
4824120-4824231
(+)
SAM-IV
4824618-4825725 (+)
Namu_4337
Extracellular solute-binding protein family 3
Namu_4337
Operon
DOOR ID:
619914
Namu_4337,
Namu_4338,
Namu_4339,
Namu_4340
View Structure
14
4828856-4828971
(+)
SAM-IV
4829006-4829141 (+)
Namu_4341
Namu_4341
Single gene
DOOR ID:
2692087
Namu_4341
View Structure
15
5446953-5447064
(-)
TPP
5445677-5446832 (-)
Namu_4885
Glycine oxidase ThiO
Namu_4885
Operon
DOOR ID:
620020
Namu_4883,
Namu_4884,
Namu_4885
View Structure
16
5830637-5830877
(+)
cobalamin
5830997-5832242 (+)
Namu_5230
ABC-type Fe3+-hydroxamate transport system periplasmic component-like protein
Namu_5230
Operon
DOOR ID:
620093
Namu_5230,
Namu_5231
View Structure
Genome:
Nakamurella multipartita DSM 44233
(
NC_013235.1
);
Phylum:
Actinobacteria
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DNA-mediated [GO:0006313]";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_013235.1";i:2;s:35:"Nakamurella multipartita DSM 44233 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"1712765-1712905";i:6;s:1:"-";i:7;s:3:"SAM";i:8;s:0:"";i:9;s:15:"1711461-1712751";i:10;s:1:"-";i:11;s:9:"Namu_1550";i:12;s:18:"Threonine synthase";i:13;s:9:"Namu_1550";i:14;s:11:"Single gene";i:15;s:7:"2691023";i:16;s:9:"Namu_1550";i:17;s:0:"";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_013235.1";i:2;s:35:"Nakamurella multipartita DSM 44233 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"1835325-1835419";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"1833385-1834252";i:10;s:1:"-";i:11;s:9:"Namu_1668";i:12;s:68:"Binding-protein-dependent transport systems inner membrane component";i:13;s:9:"Namu_1668";i:14;s:6:"Operon";i:15;s:6:"619381";i:16;s:29:"Namu_1667;Namu_1668;Namu_1669";i:17;s:36:"transmembrane transport [GO:0055085]";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_013235.1";i:2;s:35:"Nakamurella multipartita DSM 44233 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"2571070-2571270";i:6;s:1:"+";i:7;s:9:"ydaO-yuaA";i:8;s:0:"";i:9;s:15:"2571275-2572046";i:10;s:1:"+";i:11;s:9:"Namu_2328";i:12;s:31:"Transglycosylase domain protein";i:13;s:9:"Namu_2328";i:14;s:11:"Single gene";i:15;s:7:"2691370";i:16;s:9:"Namu_2328";i:17;s:0:"";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_013235.1";i:2;s:35:"Nakamurella multipartita DSM 44233 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"3564486-3564650";i:6;s:1:"-";i:7;s:9:"ydaO-yuaA";i:8;s:0:"";i:9;s:15:"3563129-3564470";i:10;s:1:"-";i:11;s:9:"Namu_3235";i:12;s:15:"NLP/P60 protein";i:13;s:9:"Namu_3235";i:14;s:6:"Operon";i:15;s:6:"619689";i:16;s:19:"Namu_3234;Namu_3235";i:17;s:0:"";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_013235.1";i:2;s:35:"Nakamurella multipartita DSM 44233 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"3567385-3567574";i:6;s:1:"-";i:7;s:9:"ydaO-yuaA";i:8;s:0:"";i:9;s:15:"3566146-3567289";i:10;s:1:"-";i:11;s:9:"Namu_3237";i:12;s:15:"NLP/P60 protein";i:13;s:9:"Namu_3237";i:14;s:11:"Single gene";i:15;s:7:"2691683";i:16;s:9:"Namu_3237";i:17;s:0:"";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_013235.1";i:2;s:35:"Nakamurella multipartita DSM 44233 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"4424240-4424343";i:6;s:1:"-";i:7;s:7:"glycine";i:8;s:0:"";i:9;s:15:"4421297-4424162";i:10;s:1:"-";i:11;s:9:"Namu_4004";i:12;s:151:"Glycine dehydrogenase (decarboxylating) (Glycine cleavage system P-protein) (Glycine decarboxylase) (Glycine dehydrogenase (aminomethyl-transferring))";i:13;s:9:"Namu_4004";i:14;s:11:"Single gene";i:15;s:7:"2691974";i:16;s:9:"Namu_4004";i:17;s:64:"glycine decarboxylation via glycine cleavage system [GO:0019464]";i:18;s:15:"View Structure ";}i:11;a:19:{i:0;i:11;i:1;s:11:"NC_013235.1";i:2;s:35:"Nakamurella multipartita DSM 44233 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"4807101-4807212";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"4806030-4806906";i:10;s:1:"-";i:11;s:9:"Namu_4321";i:12;s:15:"NUDIX hydrolase";i:13;s:9:"Namu_4321";i:14;s:11:"Single gene";i:15;s:7:"2692080";i:16;s:9:"Namu_4321";i:17;s:0:"";i:18;s:15:"View Structure ";}i:12;a:19:{i:0;i:12;i:1;s:11:"NC_013235.1";i:2;s:35:"Nakamurella multipartita DSM 44233 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"4813193-4813302";i:6;s:1:"+";i:7;s:6:"SAM-IV";i:8;s:0:"";i:9;s:15:"4813525-4814761";i:10;s:1:"+";i:11;s:9:"Namu_4327";i:12;s:47:"Putative transcriptional regulator; GntR family";i:13;s:9:"Namu_4327";i:14;s:11:"Single gene";i:15;s:7:"2692086";i:16;s:9:"Namu_4327";i:17;s:33:"biosynthetic process [GO:0009058]";i:18;s:15:"View Structure ";}i:13;a:19:{i:0;i:13;i:1;s:11:"NC_013235.1";i:2;s:35:"Nakamurella multipartita DSM 44233 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"4824120-4824231";i:6;s:1:"+";i:7;s:6:"SAM-IV";i:8;s:0:"";i:9;s:15:"4824618-4825725";i:10;s:1:"+";i:11;s:9:"Namu_4337";i:12;s:45:"Extracellular solute-binding protein family 3";i:13;s:9:"Namu_4337";i:14;s:6:"Operon";i:15;s:6:"619914";i:16;s:39:"Namu_4337;Namu_4338;Namu_4339;Namu_4340";i:17;s:0:"";i:18;s:15:"View Structure ";}i:14;a:19:{i:0;i:14;i:1;s:11:"NC_013235.1";i:2;s:35:"Nakamurella multipartita DSM 44233 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"4828856-4828971";i:6;s:1:"+";i:7;s:6:"SAM-IV";i:8;s:0:"";i:9;s:15:"4829006-4829141";i:10;s:1:"+";i:11;s:9:"Namu_4341";i:12;s:0:"";i:13;s:9:"Namu_4341";i:14;s:11:"Single gene";i:15;s:7:"2692087";i:16;s:9:"Namu_4341";i:17;s:0:"";i:18;s:15:"View Structure ";}i:15;a:19:{i:0;i:15;i:1;s:11:"NC_013235.1";i:2;s:35:"Nakamurella multipartita DSM 44233 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"5446953-5447064";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"5445677-5446832";i:10;s:1:"-";i:11;s:9:"Namu_4885";i:12;s:20:"Glycine oxidase ThiO";i:13;s:9:"Namu_4885";i:14;s:6:"Operon";i:15;s:6:"620020";i:16;s:29:"Namu_4883;Namu_4884;Namu_4885";i:17;s:0:"";i:18;s:15:"View Structure ";}i:16;a:19:{i:0;i:16;i:1;s:11:"NC_013235.1";i:2;s:35:"Nakamurella multipartita DSM 44233 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"5830637-5830877";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"5830997-5832242";i:10;s:1:"+";i:11;s:9:"Namu_5230";i:12;s:77:"ABC-type Fe3+-hydroxamate transport system periplasmic component-like protein";i:13;s:9:"Namu_5230";i:14;s:6:"Operon";i:15;s:6:"620093";i:16;s:19:"Namu_5230;Namu_5231";i:17;s:0:"";i:18;s:15:"View Structure ";}}