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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
29713-29908
(+)
cobalamin
30015-31941 (+)
Dret_0028
TonB-dependent receptor
Dret_0028
Operon
DOOR ID:
618512
Dret_0028,
Dret_0029,
Dret_0030
View Structure
2
427550-427624
(-)
c-di-GMP-I
425125-427225 (-)
Dret_0342
Methyl-accepting chemotaxis sensory transducer
Dret_0342
single gene
DOOR ID:
2689493
Dret_0342
View Structure
3
858227-858328
(+)
TPP
858745-858946 (+)
Dret_0726
Thiamine biosynthesis protein ThiS
Dret_0726
Operon
DOOR ID:
618665
Dret_0726,
Dret_0727
View Structure
4
858465-858566
(+)
TPP
858745-858946 (+)
Dret_0726
Thiamine biosynthesis protein ThiS
Dret_0726
Operon
DOOR ID:
618665
Dret_0726,
Dret_0727
View Structure
5
1118070-1118144
(+)
c-di-GMP-I
1118362-1119163 (+)
Dret_0945
Uncharacterized protein
Dret_0945
single gene
DOOR ID:
2689767
Dret_0945
View Structure
6
2606795-2606905
(+)
TPP
2607057-2607867 (+)
Dret_2294
Phosphomethylpyrimidine kinase
Dret_2294
Operon
DOOR ID:
618984
Dret_2294,
Dret_2295,
Dret_2296
View Structure
Genome:
Desulfohalobium retbaense DSM 5692
(
NC_013223.1
);
Phylum:
delta/epsilon subdivisions
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