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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
440665-440897
(+)
cobalamin
441031-443191 (+)
APA01_04230
Ferrichrome siderophore receptor
APA01_04230
Operon
DOOR ID:
616465
APA01_04230,
APA01_04240,
APA01_04250
(fecCD)
,
APA01_04260
View Structure
2
1402372-1402491
(+)
TPP
1402522-1403353 (+)
APA01_13250
Phosphomethylpyrimidine kinase
APA01_13250
Single gene
DOOR ID:
2685770
APA01_13250
View Structure
3
1586783-1586965
(-)
yybP-ykoY
1586187-1586778 (-)
APA01_14770
Putative manganese efflux pump MntP
APA01_14770
Single gene
DOOR ID:
2685831
APA01_14770
View Structure
4
1993607-1993686
(+)
sam-alpha
1993796-1995005 (+)
APA01_18390
O-succinylhomoserine sulfhydrylase (OSH sulfhydrylase) (OSHS sulfhydrylase)
APA01_18390
Single gene
DOOR ID:
2685984
APA01_18390
View Structure
5
2016522-2016668
(-)
FMN
2015369-2016422 (-)
ribD
Riboflavin biosynthesis protein RibD [Includes: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (DRAP deaminase) (93) (HTP reductase)]
APA01_18580
Operon
DOOR ID:
616753
APA01_18530,
APA01_18540,
APA01_18550,
APA01_18560,
APA01_18570,
APA01_18580
(ribD)
View Structure
6
2431073-2431311
(+)
cobalamin
2431352-2431817 (+)
APA01_22360
APA01_22360
Single gene
DOOR ID:
2686120
APA01_22360
View Structure
7
2453174-2453411
(-)
cobalamin
2452566-2452995 (-)
APA01_22540
APA01_22540
Operon
DOOR ID:
616831
APA01_22510
(cbiA)
,
APA01_22520
(cobN)
,
APA01_22530
(cobW)
,
APA01_22540
View Structure
8
2624266-2624351
(-)
glycine
2622969-2624106 (-)
APA01_24240
Glycine cleavage system T protein
APA01_24240
Operon
DOOR ID:
616864
APA01_24220,
APA01_24230,
APA01_24240
View Structure
9
2734219-2734372
(+)
TPP
2734455-2736333 (+)
thiC
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
APA01_25230
Single gene
DOOR ID:
2686222
APA01_25230
(thiC)
View Structure
10
2743541-2743762
(-)
cobalamin
2741829-2743422 (-)
oprB
Porin
APA01_25310
Single gene
DOOR ID:
2686225
APA01_25310
(oprB)
View Structure
Genome:
Acetobacter pasteurianus IFO 3283-01
(
NC_013209.1
);
Phylum:
Alphaproteobacteria
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homocysteine biosynthetic process [GO:0071268]";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_013209.1";i:2;s:36:"Acetobacter pasteurianus IFO 3283-01";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"2016522-2016668";i:6;s:1:"-";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"2015369-2016422";i:10;s:1:"-";i:11;s:4:"ribD";i:12;s:140:"Riboflavin biosynthesis protein RibD [Includes: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (DRAP deaminase) (93) (HTP reductase)]";i:13;s:11:"APA01_18580";i:14;s:6:"Operon";i:15;s:6:"616753";i:16;s:77:"APA01_18530;APA01_18540;APA01_18550;APA01_18560;APA01_18570;APA01_18580(ribD)";i:17;s:44:"riboflavin biosynthetic process [GO:0009231]";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_013209.1";i:2;s:36:"Acetobacter pasteurianus IFO 3283-01";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"2431073-2431311";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"2431352-2431817";i:10;s:1:"+";i:11;s:11:"APA01_22360";i:12;s:0:"";i:13;s:11:"APA01_22360";i:14;s:11:"Single gene";i:15;s:7:"2686120";i:16;s:11:"APA01_22360";i:17;s:0:"";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_013209.1";i:2;s:36:"Acetobacter pasteurianus IFO 3283-01";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"2453174-2453411";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"2452566-2452995";i:10;s:1:"-";i:11;s:11:"APA01_22540";i:12;s:0:"";i:13;s:11:"APA01_22540";i:14;s:6:"Operon";i:15;s:6:"616831";i:16;s:65:"APA01_22510(cbiA);APA01_22520(cobN);APA01_22530(cobW);APA01_22540";i:17;s:0:"";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_013209.1";i:2;s:36:"Acetobacter pasteurianus IFO 3283-01";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"2624266-2624351";i:6;s:1:"-";i:7;s:7:"glycine";i:8;s:0:"";i:9;s:15:"2622969-2624106";i:10;s:1:"-";i:11;s:11:"APA01_24240";i:12;s:33:"Glycine cleavage system T protein";i:13;s:11:"APA01_24240";i:14;s:6:"Operon";i:15;s:6:"616864";i:16;s:35:"APA01_24220;APA01_24230;APA01_24240";i:17;s:38:"glycine catabolic process [GO:0006546]";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_013209.1";i:2;s:36:"Acetobacter pasteurianus IFO 3283-01";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"2734219-2734372";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"2734455-2736333";i:10;s:1:"+";i:11;s:4:"thiC";i:12;s:176:"Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)";i:13;s:11:"APA01_25230";i:14;s:11:"Single gene";i:15;s:7:"2686222";i:16;s:17:"APA01_25230(thiC)";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_013209.1";i:2;s:36:"Acetobacter pasteurianus IFO 3283-01";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"2743541-2743762";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"2741829-2743422";i:10;s:1:"-";i:11;s:4:"oprB";i:12;s:5:"Porin";i:13;s:11:"APA01_25310";i:14;s:11:"Single gene";i:15;s:7:"2686225";i:16;s:17:"APA01_25310(oprB)";i:17;s:63:"carbohydrate transport [GO:0008643]; ion transport [GO:0006811]";i:18;s:15:"View Structure ";}}
