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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
114594-114773
(-)
lysine
113149-114493 (-)
lysA
LC705_00104
Operon
DOOR ID:
613536
LC705_00101,
LC705_00102
(hipO)
,
LC705_00103
(dapD)
,
LC705_00104
(lysA)
View Structure
2
357298-357387
(+)
TPP
357584-358154 (+)
LC705_00352
LC705_00352
Operon
DOOR ID:
613587
LC705_00352,
LC705_00353
(cbiO)
,
LC705_00354
(cbiQ)
View Structure
3
885925-886012
(+)
SMK_box
887723-889217 (+)
mdr
LC705_00894
Single gene
DOOR ID:
2680164
LC705_00894
(mdr)
View Structure
4
1322776-1322939
(+)
ykoK
1323152-1323794 (+)
LC705_01333
LC705_01333
Single gene
DOOR ID:
2680329
LC705_01333
View Structure
5
1392776-1392897
(+)
FMN
1392994-1393573 (+)
LC705_01398
LC705_01398
Single gene
DOOR ID:
2680348
LC705_01398
View Structure
6
1814042-1814139
(-)
TPP
1813394-1814000 (-)
LC705_01797
LC705_01797
Single gene
DOOR ID:
2680449
LC705_01797
View Structure
7
1904863-1905038
(-)
lysine
1904483-1904801 (+)
LC705_01881
LC705_01881
Single gene
DOOR ID:
2680492
LC705_01881
View Structure
8
2081789-2081913
(-)
preQ1-II
2081288-2081789 (-)
ccl
LC705_02052
Single gene
DOOR ID:
2680575
LC705_02052
(ccl)
View Structure
9
2279754-2279848
(-)
THF
2279197-2279716 (-)
LC705_02242
LC705_02242
Single gene
DOOR ID:
2680650
LC705_02242
View Structure
10
2470159-2470213
(-)
fluoride
2469680-2470091 (-)
LC705_02431
LC705_02431
Operon
DOOR ID:
614034
LC705_02430,
LC705_02431
View Structure
11
2880862-2881035
(+)
lysine
2881132-2882740 (+)
glnP
LC705_02835
Operon
DOOR ID:
614124
LC705_02835
(glnP)
,
LC705_02836
(glnQ)
View Structure
Genome:
Lactobacillus rhamnosus Lc 705
(
NC_013199.1
);
Phylum:
Firmicutes
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