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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
33502-33601
(+)
TPP
33697-35614 (+)
CAP2UW1_0031
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
CAP2UW1_0031
Single gene
DOOR ID:
2677350
CAP2UW1_0031
View Structure
2
262814-262889
(-)
sam-alpha
259024-262741 (-)
metH
Methionine synthase (3) (5-methyltetrahydrofolate--homocysteine methyltransferase)
CAP2UW1_0214
Operon
DOOR ID:
612004
CAP2UW1_0213,
CAP2UW1_0214
(metH)
View Structure
3
469928-470000
(-)
SAH
468406-469816 (-)
CAP2UW1_0397
Adenosylhomocysteinase (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase)
CAP2UW1_0397
Operon
DOOR ID:
612043
CAP2UW1_0391,
CAP2UW1_0392,
CAP2UW1_0393,
CAP2UW1_0394,
CAP2UW1_0395,
CAP2UW1_0396,
CAP2UW1_0397
View Structure
4
488777-488986
(-)
cobalamin
487967-488645 (-)
CAP2UW1_0416
Cobalt transport protein CbiM (Energy-coupling factor transporter probable substrate-capture protein CbiM) (ECF transporter S component CbiM)
CAP2UW1_0416
Operon
DOOR ID:
612047
CAP2UW1_0415,
CAP2UW1_0416
View Structure
5
1004038-1004135
(+)
c-di-GMP-I
1004438-1009235 (+)
CAP2UW1_0873
Serralysin
CAP2UW1_0873
single gene
DOOR ID:
2677578
CAP2UW1_0873
View Structure
6
2210722-2210808
(-)
glycine
2209456-2210545 (-)
CAP2UW1_1960
Aminomethyltransferase (0) (Glycine cleavage system T protein)
CAP2UW1_1960
Operon
DOOR ID:
612374
CAP2UW1_1954,
CAP2UW1_1955,
CAP2UW1_1956,
CAP2UW1_1957,
CAP2UW1_1958,
CAP2UW1_1959,
CAP2UW1_1960
View Structure
7
2308436-2308654
(-)
cobalamin
2307635-2308313 (-)
CAP2UW1_2053
Cobalt transport protein CbiM (Energy-coupling factor transporter probable substrate-capture protein CbiM) (ECF transporter S component CbiM)
CAP2UW1_2053
Operon
DOOR ID:
612390
CAP2UW1_2050,
CAP2UW1_2051,
CAP2UW1_2052,
CAP2UW1_2053
View Structure
8
3000257-3000395
(+)
SAH
3000763-3001555 (+)
CAP2UW1_2605
Extracellular solute-binding protein family 3
CAP2UW1_2605
Operon
DOOR ID:
612513
CAP2UW1_2602,
CAP2UW1_2603,
CAP2UW1_2604,
CAP2UW1_2605,
CAP2UW1_2606
View Structure
9
3023084-3023314
(-)
cobalamin
3022289-3022904 (-)
CAP2UW1_2621
Cob(I)yrinic acid a;c-diamide adenosyltransferase (7) (Cob(I)alamin adenosyltransferase) (Corrinoid adenosyltransferase)
CAP2UW1_2621
Operon
DOOR ID:
612516
CAP2UW1_2619,
CAP2UW1_2620,
CAP2UW1_2621
View Structure
10
4465455-4465663
(-)
cobalamin
4463455-4465327 (-)
CAP2UW1_3902
TonB-dependent receptor
CAP2UW1_3902
Single gene
DOOR ID:
2678546
CAP2UW1_3902
View Structure
Genome:
Candidatus Accumulibacter phosphatis clade IIA str. UW-1
(
NC_013194.1
);
Phylum:
Betaproteobacteria
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UW-1 ";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:11:"33502-33601";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:11:"33697-35614";i:10;s:1:"+";i:11;s:12:"CAP2UW1_0031";i:12;s:176:"Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)";i:13;s:12:"CAP2UW1_0031";i:14;s:11:"Single gene";i:15;s:7:"2677350";i:16;s:12:"CAP2UW1_0031";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_013194.1";i:2;s:57:"Candidatus Accumulibacter phosphatis clade IIA str. UW-1 ";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:13:"262814-262889";i:6;s:1:"-";i:7;s:9:"sam-alpha";i:8;s:0:"";i:9;s:13:"259024-262741";i:10;s:1:"-";i:11;s:4:"metH";i:12;s:82:"Methionine synthase (3) (5-methyltetrahydrofolate--homocysteine methyltransferase)";i:13;s:12:"CAP2UW1_0214";i:14;s:6:"Operon";i:15;s:6:"612004";i:16;s:31:"CAP2UW1_0213;CAP2UW1_0214(metH)";i:17;s:60:"pteridine-containing compound metabolic process [GO:0042558]";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_013194.1";i:2;s:57:"Candidatus Accumulibacter phosphatis clade IIA str. UW-1 ";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:13:"469928-470000";i:6;s:1:"-";i:7;s:3:"SAH";i:8;s:0:"";i:9;s:13:"468406-469816";i:10;s:1:"-";i:11;s:12:"CAP2UW1_0397";i:12;s:73:"Adenosylhomocysteinase (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase)";i:13;s:12:"CAP2UW1_0397";i:14;s:6:"Operon";i:15;s:6:"612043";i:16;s:90:"CAP2UW1_0391;CAP2UW1_0392;CAP2UW1_0393;CAP2UW1_0394;CAP2UW1_0395;CAP2UW1_0396;CAP2UW1_0397";i:17;s:96:"one-carbon metabolic process [GO:0006730]; S-adenosylhomocysteine catabolic process [GO:0019510]";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_013194.1";i:2;s:57:"Candidatus Accumulibacter phosphatis clade IIA str. UW-1 ";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:13:"488777-488986";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:13:"487967-488645";i:10;s:1:"-";i:11;s:12:"CAP2UW1_0416";i:12;s:141:"Cobalt transport protein CbiM (Energy-coupling factor transporter probable substrate-capture protein CbiM) (ECF transporter S component CbiM)";i:13;s:12:"CAP2UW1_0416";i:14;s:6:"Operon";i:15;s:6:"612047";i:16;s:25:"CAP2UW1_0415;CAP2UW1_0416";i:17;s:43:"cobalamin biosynthetic process [GO:0009236]";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_013194.1";i:2;s:57:"Candidatus Accumulibacter phosphatis clade IIA str. UW-1 ";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"1004038-1004135";i:6;s:1:"+";i:7;s:10:"c-di-GMP-I";i:8;s:0:"";i:9;s:15:"1004438-1009235";i:10;s:1:"+";i:11;s:12:"CAP2UW1_0873";i:12;s:11:"Serralysin ";i:13;s:12:"CAP2UW1_0873";i:14;s:11:"single gene";i:15;s:7:"2677578";i:16;s:12:"CAP2UW1_0873";i:17;s:25:"pathogenesis [GO:0009405]";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_013194.1";i:2;s:57:"Candidatus Accumulibacter phosphatis clade IIA str. UW-1 ";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"2210722-2210808";i:6;s:1:"-";i:7;s:7:"glycine";i:8;s:0:"";i:9;s:15:"2209456-2210545";i:10;s:1:"-";i:11;s:12:"CAP2UW1_1960";i:12;s:62:"Aminomethyltransferase (0) (Glycine cleavage system T protein)";i:13;s:12:"CAP2UW1_1960";i:14;s:6:"Operon";i:15;s:6:"612374";i:16;s:90:"CAP2UW1_1954;CAP2UW1_1955;CAP2UW1_1956;CAP2UW1_1957;CAP2UW1_1958;CAP2UW1_1959;CAP2UW1_1960";i:17;s:64:"glycine decarboxylation via glycine cleavage system [GO:0019464]";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_013194.1";i:2;s:57:"Candidatus Accumulibacter phosphatis clade IIA str. UW-1 ";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"2308436-2308654";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"2307635-2308313";i:10;s:1:"-";i:11;s:12:"CAP2UW1_2053";i:12;s:141:"Cobalt transport protein CbiM (Energy-coupling factor transporter probable substrate-capture protein CbiM) (ECF transporter S component CbiM)";i:13;s:12:"CAP2UW1_2053";i:14;s:6:"Operon";i:15;s:6:"612390";i:16;s:51:"CAP2UW1_2050;CAP2UW1_2051;CAP2UW1_2052;CAP2UW1_2053";i:17;s:43:"cobalamin biosynthetic process [GO:0009236]";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_013194.1";i:2;s:57:"Candidatus Accumulibacter phosphatis clade IIA str. UW-1 ";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"3000257-3000395";i:6;s:1:"+";i:7;s:3:"SAH";i:8;s:0:"";i:9;s:15:"3000763-3001555";i:10;s:1:"+";i:11;s:12:"CAP2UW1_2605";i:12;s:45:"Extracellular solute-binding protein family 3";i:13;s:12:"CAP2UW1_2605";i:14;s:6:"Operon";i:15;s:6:"612513";i:16;s:64:"CAP2UW1_2602;CAP2UW1_2603;CAP2UW1_2604;CAP2UW1_2605;CAP2UW1_2606";i:17;s:0:"";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_013194.1";i:2;s:57:"Candidatus Accumulibacter phosphatis clade IIA str. UW-1 ";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"3023084-3023314";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"3022289-3022904";i:10;s:1:"-";i:11;s:12:"CAP2UW1_2621";i:12;s:120:"Cob(I)yrinic acid a;c-diamide adenosyltransferase (7) (Cob(I)alamin adenosyltransferase) (Corrinoid adenosyltransferase)";i:13;s:12:"CAP2UW1_2621";i:14;s:6:"Operon";i:15;s:6:"612516";i:16;s:38:"CAP2UW1_2619;CAP2UW1_2620;CAP2UW1_2621";i:17;s:108:"cobalamin biosynthetic process [GO:0009236]; porphyrin-containing compound biosynthetic process [GO:0006779]";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_013194.1";i:2;s:57:"Candidatus Accumulibacter phosphatis clade IIA str. UW-1 ";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"4465455-4465663";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"4463455-4465327";i:10;s:1:"-";i:11;s:12:"CAP2UW1_3902";i:12;s:23:"TonB-dependent receptor";i:13;s:12:"CAP2UW1_3902";i:14;s:11:"Single gene";i:15;s:7:"2678546";i:16;s:12:"CAP2UW1_3902";i:17;s:0:"";i:18;s:15:"View Structure ";}}
