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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
97612-97720
(+)
TPP
97822-98506 (+)
Jden_0088
YKOF domain protein
Jden_0088
Single gene
DOOR ID:
2675711
Jden_0088
View Structure
2
206306-206413
(-)
SAM
205278-206298 (-)
Jden_0190
Methylenetetrahydrofolate reductase (0)
Jden_0190
Operon
DOOR ID:
610889
Jden_0189,
Jden_0190,
Jden_0191
View Structure
3
334507-334610
(+)
TPP
334654-335746 (+)
Jden_0314
ABC transporter; periplasmic binding protein; thiB subfamily
Jden_0314
Operon
DOOR ID:
610917
Jden_0314,
Jden_0315,
Jden_0316,
Jden_0317
View Structure
4
729244-729330
(+)
ZMP-ZTP
729391-730993 (+)
Jden_0678
Bifunctional purine biosynthesis protein PurH [Includes: Phosphoribosylaminoimidazolecarboxamide formyltransferase (0) (ATIC) (IMP synthase) (Inosinicase)]
Jden_0678
Single gene
DOOR ID:
2675907
Jden_0678
View Structure
5
732489-732622
(+)
FMN
732769-733834 (+)
Jden_0680
Riboflavin biosynthesis protein RibD [Includes: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (DRAP deaminase) (93) (HTP reductase)]
Jden_0680
Operon
DOOR ID:
610995
Jden_0680,
Jden_0681,
Jden_0682,
Jden_0683,
Jden_0684
View Structure
6
747589-747697
(+)
ZMP-ZTP
747799-749089 (+)
Jden_0694
Serine hydroxymethyltransferase (SHMT) (Serine methylase)
Jden_0694
Operon
DOOR ID:
610998
Jden_0694,
Jden_0695,
Jden_0696
View Structure
7
1249348-1249415
(+)
ykkC-III
1249425-1249743 (+)
Jden_1174
Jden_1174
operon
DOOR ID:
611111
Jden_1174,
Jden_1175
View Structure
8
1254731-1254825
(+)
TPP
1254873-1255647 (+)
Jden_1181
Hydroxyethylthiazole kinase (0) (4-methyl-5-beta-hydroxyethylthiazole kinase) (TH kinase) (Thz kinase)
Jden_1181
Operon
DOOR ID:
611113
Jden_1181,
Jden_1182,
Jden_1183
View Structure
9
1744459-1744566
(-)
TPP
1742187-1743129 (+)
Jden_1616
Jden_1616
Single gene
DOOR ID:
2676171
Jden_1616
View Structure
10
2088246-2088420
(-)
ykoK
2086826-2088164 (-)
Jden_1907
Magnesium transporter MgtE
Jden_1907
Single gene
DOOR ID:
2676282
Jden_1907
View Structure
11
2182022-2182209
(-)
ydaO-yuaA
2181203-2182019 (-)
Jden_1987
NLP/P60 protein
Jden_1987
Single gene
DOOR ID:
2676314
Jden_1987
View Structure
12
2557291-2557408
(-)
SAM-IV
2555736-2557173 (-)
Jden_2391
Cysteine desulfurase
Jden_2391
Single gene
DOOR ID:
2676416
Jden_2391
View Structure
13
2557521-2557618
(+)
SAM
2557623-2558049 (+)
Jden_2392
Rhodanese domain protein
Jden_2392
Operon
DOOR ID:
611373
Jden_2392,
Jden_2393,
Jden_2394,
Jden_2395
View Structure
14
2602461-2602632
(+)
ydaO-yuaA
2602649-2603486 (+)
Jden_2429
NLP/P60 protein
Jden_2429
Single gene
DOOR ID:
2676431
Jden_2429
View Structure
Genome:
Jonesia denitrificans DSM 20603
(
NC_013174.1
);
Phylum:
Actinobacteria
a:15:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_013174.1";i:2;s:32:"Jonesia denitrificans DSM 20603 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:11:"97612-97720";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:11:"97822-98506";i:10;s:1:"+";i:11;s:9:"Jden_0088";i:12;s:19:"YKOF domain protein";i:13;s:9:"Jden_0088";i:14;s:11:"Single gene";i:15;s:7:"2675711";i:16;s:9:"Jden_0088";i:17;s:0:"";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_013174.1";i:2;s:32:"Jonesia denitrificans DSM 20603 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:13:"206306-206413";i:6;s:1:"-";i:7;s:3:"SAM";i:8;s:0:"";i:9;s:13:"205278-206298";i:10;s:1:"-";i:11;s:9:"Jden_0190";i:12;s:39:"Methylenetetrahydrofolate reductase (0)";i:13;s:9:"Jden_0190";i:14;s:6:"Operon";i:15;s:6:"610889";i:16;s:29:"Jden_0189;Jden_0190;Jden_0191";i:17;s:143:"cellular amino acid biosynthetic process [GO:0008652]; methionine metabolic process [GO:0006555]; tetrahydrofolate interconversion [GO:0035999]";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_013174.1";i:2;s:32:"Jonesia denitrificans DSM 20603 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:13:"334507-334610";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:13:"334654-335746";i:10;s:1:"+";i:11;s:9:"Jden_0314";i:12;s:60:"ABC transporter; periplasmic binding protein; thiB subfamily";i:13;s:9:"Jden_0314";i:14;s:6:"Operon";i:15;s:6:"610917";i:16;s:39:"Jden_0314;Jden_0315;Jden_0316;Jden_0317";i:17;s:31:"thiamine transport [GO:0015888]";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_013174.1";i:2;s:32:"Jonesia denitrificans DSM 20603 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:13:"729244-729330";i:6;s:1:"+";i:7;s:7:"ZMP-ZTP";i:8;s:0:"";i:9;s:13:"729391-730993";i:10;s:1:"+";i:11;s:9:"Jden_0678";i:12;s:155:"Bifunctional purine biosynthesis protein PurH [Includes: Phosphoribosylaminoimidazolecarboxamide formyltransferase (0) (ATIC) (IMP synthase) (Inosinicase)]";i:13;s:9:"Jden_0678";i:14;s:11:"Single gene";i:15;s:7:"2675907";i:16;s:9:"Jden_0678";i:17;s:47:"'de novo' IMP biosynthetic process [GO:0006189]";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_013174.1";i:2;s:32:"Jonesia denitrificans DSM 20603 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:13:"732489-732622";i:6;s:1:"+";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:13:"732769-733834";i:10;s:1:"+";i:11;s:9:"Jden_0680";i:12;s:140:"Riboflavin biosynthesis protein RibD [Includes: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (DRAP deaminase) (93) (HTP reductase)]";i:13;s:9:"Jden_0680";i:14;s:6:"Operon";i:15;s:6:"610995";i:16;s:49:"Jden_0680;Jden_0681;Jden_0682;Jden_0683;Jden_0684";i:17;s:44:"riboflavin biosynthetic process [GO:0009231]";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_013174.1";i:2;s:32:"Jonesia denitrificans DSM 20603 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:13:"747589-747697";i:6;s:1:"+";i:7;s:7:"ZMP-ZTP";i:8;s:0:"";i:9;s:13:"747799-749089";i:10;s:1:"+";i:11;s:9:"Jden_0694";i:12;s:58:"Serine hydroxymethyltransferase (SHMT) (Serine methylase) ";i:13;s:9:"Jden_0694";i:14;s:6:"Operon";i:15;s:6:"610998";i:16;s:29:"Jden_0694;Jden_0695;Jden_0696";i:17;s:100:"glycine biosynthetic process from serine [GO:0019264]; tetrahydrofolate interconversion [GO:0035999]";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_013174.1";i:2;s:32:"Jonesia denitrificans DSM 20603 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"1249348-1249415";i:6;s:1:"+";i:7;s:8:"ykkC-III";i:8;s:0:"";i:9;s:15:"1249425-1249743";i:10;s:1:"+";i:11;s:9:"Jden_1174";i:12;s:0:"";i:13;s:9:"Jden_1174";i:14;s:6:"operon";i:15;s:6:"611111";i:16;s:19:"Jden_1174;Jden_1175";i:17;s:0:"";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_013174.1";i:2;s:32:"Jonesia denitrificans DSM 20603 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"1254731-1254825";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"1254873-1255647";i:10;s:1:"+";i:11;s:9:"Jden_1181";i:12;s:102:"Hydroxyethylthiazole kinase (0) (4-methyl-5-beta-hydroxyethylthiazole kinase) (TH kinase) (Thz kinase)";i:13;s:9:"Jden_1181";i:14;s:6:"Operon";i:15;s:6:"611113";i:16;s:29:"Jden_1181;Jden_1182;Jden_1183";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_013174.1";i:2;s:32:"Jonesia denitrificans DSM 20603 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"1744459-1744566";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"1742187-1743129";i:10;s:1:"+";i:11;s:9:"Jden_1616";i:12;s:0:"";i:13;s:9:"Jden_1616";i:14;s:11:"Single gene";i:15;s:7:"2676171";i:16;s:9:"Jden_1616";i:17;s:0:"";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_013174.1";i:2;s:32:"Jonesia denitrificans DSM 20603 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"2088246-2088420";i:6;s:1:"-";i:7;s:4:"ykoK";i:8;s:0:"";i:9;s:15:"2086826-2088164";i:10;s:1:"-";i:11;s:9:"Jden_1907";i:12;s:26:"Magnesium transporter MgtE";i:13;s:9:"Jden_1907";i:14;s:11:"Single gene";i:15;s:7:"2676282";i:16;s:9:"Jden_1907";i:17;s:0:"";i:18;s:15:"View Structure ";}i:11;a:19:{i:0;i:11;i:1;s:11:"NC_013174.1";i:2;s:32:"Jonesia denitrificans DSM 20603 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"2182022-2182209";i:6;s:1:"-";i:7;s:9:"ydaO-yuaA";i:8;s:0:"";i:9;s:15:"2181203-2182019";i:10;s:1:"-";i:11;s:9:"Jden_1987";i:12;s:15:"NLP/P60 protein";i:13;s:9:"Jden_1987";i:14;s:11:"Single gene";i:15;s:7:"2676314";i:16;s:9:"Jden_1987";i:17;s:0:"";i:18;s:15:"View Structure ";}i:12;a:19:{i:0;i:12;i:1;s:11:"NC_013174.1";i:2;s:32:"Jonesia denitrificans DSM 20603 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"2557291-2557408";i:6;s:1:"-";i:7;s:6:"SAM-IV";i:8;s:0:"";i:9;s:15:"2555736-2557173";i:10;s:1:"-";i:11;s:9:"Jden_2391";i:12;s:21:"Cysteine desulfurase ";i:13;s:9:"Jden_2391";i:14;s:11:"Single gene";i:15;s:7:"2676416";i:16;s:9:"Jden_2391";i:17;s:0:"";i:18;s:15:"View Structure ";}i:13;a:19:{i:0;i:13;i:1;s:11:"NC_013174.1";i:2;s:32:"Jonesia denitrificans DSM 20603 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"2557521-2557618";i:6;s:1:"+";i:7;s:3:"SAM";i:8;s:0:"";i:9;s:15:"2557623-2558049";i:10;s:1:"+";i:11;s:9:"Jden_2392";i:12;s:24:"Rhodanese domain protein";i:13;s:9:"Jden_2392";i:14;s:6:"Operon";i:15;s:6:"611373";i:16;s:39:"Jden_2392;Jden_2393;Jden_2394;Jden_2395";i:17;s:0:"";i:18;s:15:"View Structure ";}i:14;a:19:{i:0;i:14;i:1;s:11:"NC_013174.1";i:2;s:32:"Jonesia denitrificans DSM 20603 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"2602461-2602632";i:6;s:1:"+";i:7;s:9:"ydaO-yuaA";i:8;s:0:"";i:9;s:15:"2602649-2603486";i:10;s:1:"+";i:11;s:9:"Jden_2429";i:12;s:15:"NLP/P60 protein";i:13;s:9:"Jden_2429";i:14;s:11:"Single gene";i:15;s:7:"2676431";i:16;s:9:"Jden_2429";i:17;s:0:"";i:18;s:15:"View Structure ";}}