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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
26075-26218
(+)
glmS
26240-28064 (+)
Apre_0021
Glutamine--fructose-6-phosphate aminotransferase [isomerizing] (6) (D-fructose-6-phosphate amidotransferase) (GFAT) (Glucosamine-6-phosphate synthase) (Hexosephosphate aminotransferase) (L-glutamine--D-fructose-6-phosphate amidotransferase)
Apre_0021
Single gene
DOOR ID:
2673025
Apre_0021
View Structure
2
195477-195566
(+)
TPP
195592-196138 (+)
Apre_0166
Proton-coupled thiamine transporter YuaJ
Apre_0166
Single gene
DOOR ID:
2673068
Apre_0166
View Structure
3
208337-208452
(+)
FMN
208511-209108 (+)
Apre_0181
Riboflavin transporter
Apre_0181
Single gene
DOOR ID:
2673071
Apre_0181
View Structure
4
1068948-1069037
(+)
THF
1069057-1069573 (+)
Apre_0997
Apre_0997
Single gene
DOOR ID:
2673236
Apre_0997
View Structure
5
1198566-1198664
(-)
TPP
1197241-1198537 (-)
Apre_1114
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
Apre_1114
Single gene
DOOR ID:
2673253
Apre_1114
View Structure
6
1243484-1243595
(-)
FMN
1242334-1243408 (-)
Apre_1161
Riboflavin biosynthesis protein RibD [Includes: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (DRAP deaminase) (93) (HTP reductase)]
Apre_1161
Operon
DOOR ID:
609327
Apre_1157,
Apre_1158,
Apre_1159,
Apre_1160,
Apre_1161
View Structure
7
1498258-1498360
(-)
TPP
1497394-1498192 (-)
Apre_1397
Phosphomethylpyrimidine kinase
Apre_1397
Operon
DOOR ID:
609378
Apre_1396,
Apre_1397
View Structure
8
1671267-1671333
(-)
fluoride
1670045-1671236 (-)
Apre_1535
Sodium/hydrogen exchanger
Apre_1535
Single gene
DOOR ID:
2673361
Apre_1535
View Structure
9
1778415-1778514
(-)
TPP
1778065-1778263 (-)
Apre_1634
Thiamine biosynthesis protein ThiS
Apre_1634
Operon
DOOR ID:
609418
Apre_1628,
Apre_1629,
Apre_1630,
Apre_1631
(thiH)
,
Apre_1632,
Apre_1633,
Apre_1634
View Structure
Genome:
Anaerococcus prevotii DSM 20548
(
NC_013171.1
);
Phylum:
Firmicutes
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carbohydrate metabolic process [GO:0005975]";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_013171.1";i:2;s:32:"Anaerococcus prevotii DSM 20548 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"195477-195566";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:13:"195592-196138";i:10;s:1:"+";i:11;s:9:"Apre_0166";i:12;s:40:"Proton-coupled thiamine transporter YuaJ";i:13;s:9:"Apre_0166";i:14;s:11:"Single gene";i:15;s:7:"2673068";i:16;s:9:"Apre_0166";i:17;s:31:"thiamine transport [GO:0015888]";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_013171.1";i:2;s:32:"Anaerococcus prevotii DSM 20548 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"208337-208452";i:6;s:1:"+";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:13:"208511-209108";i:10;s:1:"+";i:11;s:9:"Apre_0181";i:12;s:22:"Riboflavin transporter";i:13;s:9:"Apre_0181";i:14;s:11:"Single gene";i:15;s:7:"2673071";i:16;s:9:"Apre_0181";i:17;s:0:"";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_013171.1";i:2;s:32:"Anaerococcus prevotii DSM 20548 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1068948-1069037";i:6;s:1:"+";i:7;s:3:"THF";i:8;s:0:"";i:9;s:15:"1069057-1069573";i:10;s:1:"+";i:11;s:9:"Apre_0997";i:12;s:0:"";i:13;s:9:"Apre_0997";i:14;s:11:"Single gene";i:15;s:7:"2673236";i:16;s:9:"Apre_0997";i:17;s:0:"";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_013171.1";i:2;s:32:"Anaerococcus prevotii DSM 20548 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1198566-1198664";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"1197241-1198537";i:10;s:1:"-";i:11;s:9:"Apre_1114";i:12;s:176:"Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)";i:13;s:9:"Apre_1114";i:14;s:11:"Single gene";i:15;s:7:"2673253";i:16;s:9:"Apre_1114";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_013171.1";i:2;s:32:"Anaerococcus prevotii DSM 20548 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1243484-1243595";i:6;s:1:"-";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"1242334-1243408";i:10;s:1:"-";i:11;s:9:"Apre_1161";i:12;s:140:"Riboflavin biosynthesis protein RibD [Includes: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (DRAP deaminase) (93) (HTP reductase)]";i:13;s:9:"Apre_1161";i:14;s:6:"Operon";i:15;s:6:"609327";i:16;s:49:"Apre_1157;Apre_1158;Apre_1159;Apre_1160;Apre_1161";i:17;s:44:"riboflavin biosynthetic process [GO:0009231]";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_013171.1";i:2;s:32:"Anaerococcus prevotii DSM 20548 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1498258-1498360";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"1497394-1498192";i:10;s:1:"-";i:11;s:9:"Apre_1397";i:12;s:31:"Phosphomethylpyrimidine kinase ";i:13;s:9:"Apre_1397";i:14;s:6:"Operon";i:15;s:6:"609378";i:16;s:19:"Apre_1396;Apre_1397";i:17;s:42:"thiamine biosynthetic process [GO:0009228]";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_013171.1";i:2;s:32:"Anaerococcus prevotii DSM 20548 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1671267-1671333";i:6;s:1:"-";i:7;s:8:"fluoride";i:8;s:0:"";i:9;s:15:"1670045-1671236";i:10;s:1:"-";i:11;s:9:"Apre_1535";i:12;s:25:"Sodium/hydrogen exchanger";i:13;s:9:"Apre_1535";i:14;s:11:"Single gene";i:15;s:7:"2673361";i:16;s:9:"Apre_1535";i:17;s:0:"";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_013171.1";i:2;s:32:"Anaerococcus prevotii DSM 20548 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1778415-1778514";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"1778065-1778263";i:10;s:1:"-";i:11;s:9:"Apre_1634";i:12;s:34:"Thiamine biosynthesis protein ThiS";i:13;s:9:"Apre_1634";i:14;s:6:"Operon";i:15;s:6:"609418";i:16;s:75:"Apre_1628;Apre_1629;Apre_1630;Apre_1631(thiH);Apre_1632;Apre_1633;Apre_1634";i:17;s:0:"";i:18;s:15:"View Structure ";}}
