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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
154277-154404
(+)
FMN
154606-155992 (+)
Ksed_01550
Riboflavin biosynthesis protein RibD
Ksed_01550
Operon
DOOR ID:
608295
Ksed_01550,
Ksed_01560,
Ksed_01570
View Structure
2
241801-241915
(+)
SAM-IV
241945-242308 (+)
Ksed_02420
Ksed_02420
Single gene
DOOR ID:
2671724
Ksed_02420
View Structure
3
287141-287234
(+)
TPP
288162-289044 (-)
Ksed_02970
Predicted oxidoreductase; aryl-alcohol dehydrogenase like protein
Ksed_02970
Single gene
DOOR ID:
2671743
Ksed_02970
View Structure
4
289108-289202
(+)
TPP
289255-289903 (+)
Ksed_02990
Thiamine-phosphate synthase (TP synthase) (TPS) (Thiamine-phosphate pyrophosphorylase) (TMP pyrophosphorylase) (TMP-PPase)
Ksed_02990
Operon
DOOR ID:
608321
Ksed_02990,
Ksed_03000
View Structure
5
374386-374542
(+)
ydaO-yuaA
374548-375475 (+)
Ksed_03860
Transglycosylase-like protein
Ksed_03860
Single gene
DOOR ID:
2671766
Ksed_03860
View Structure
6
375737-375890
(+)
ydaO-yuaA
375896-376721 (+)
Ksed_03870
Transglycosylase family protein
Ksed_03870
Single gene
DOOR ID:
2671767
Ksed_03870
View Structure
7
451553-451658
(+)
TPP
451661-452840 (+)
Ksed_04580
ABC transporter periplasmic binding protein; thiB subfamily
Ksed_04580
Operon
DOOR ID:
608361
Ksed_04580,
Ksed_04590,
Ksed_04600
View Structure
8
473050-473150
(+)
SAM
473162-473300 (+)
Ksed_04780
Ksed_04780
Single gene
DOOR ID:
2671794
Ksed_04780
View Structure
9
1095588-1095654
(+)
SAH
1096186-1096447 (+)
Ksed_10700
Ksed_10700
Operon
DOOR ID:
608489
Ksed_10700,
Ksed_10710,
Ksed_10720
(gltX)
View Structure
10
1537220-1537305
(-)
glycine
1534188-1537146 (-)
Ksed_14930
Glycine dehydrogenase (decarboxylating) (Glycine cleavage system P-protein) (Glycine decarboxylase) (Glycine dehydrogenase (aminomethyl-transferring))
Ksed_14930
Single gene
DOOR ID:
2672109
Ksed_14930
View Structure
11
1543196-1543409
(+)
cobalamin
1543448-1543907 (+)
Ksed_15050
Acyl-CoA hydrolase
Ksed_15050
Operon
DOOR ID:
608577
Ksed_15050,
Ksed_15060
View Structure
12
1583527-1583709
(+)
ydaO-yuaA
1583757-1584198 (+)
Ksed_15430
Cell wall-associated hydrolase; invasion-associated protein
Ksed_15430
Single gene
DOOR ID:
2672122
Ksed_15430
View Structure
13
1761094-1761186
(-)
SAM
1759899-1760871 (-)
Ksed_17000
ABC-type metal ion transport system; ATPase component
Ksed_17000
Operon
DOOR ID:
608613
Ksed_16970,
Ksed_16980,
Ksed_16990,
Ksed_17000
View Structure
14
1810251-1810368
(+)
cobalamin
1810505-1811708 (+)
Ksed_17430
Ksed_17430
Operon
DOOR ID:
608624
Ksed_17430,
Ksed_17440,
Ksed_17450,
Ksed_17460,
Ksed_17470,
Ksed_17480
View Structure
15
2057634-2057743
(-)
TPP
2055894-2057559 (-)
Ksed_19710
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
Ksed_19710
Single gene
DOOR ID:
2672269
Ksed_19710
View Structure
16
2059954-2060019
(-)
ykkC-III
2059621-2059939 (-)
Ksed_19750
Ksed_19750
single gene
DOOR ID:
2672272
Ksed_19750
View Structure
17
2273160-2273365
(-)
cobalamin
2270331-2272959 (-)
Ksed_21940
Ribonucleoside-diphosphate reductase
Ksed_21940
Operon
DOOR ID:
608723
Ksed_21930,
Ksed_21940
View Structure
18
2652567-2652653
(-)
fluoride
2650330-2651929 (+)
Ksed_25810
Putative exporter of polyketide antibiotics
Ksed_25810
Operon
DOOR ID:
608800
Ksed_25800,
Ksed_25810
View Structure
Genome:
Kytococcus sedentarius DSM 20547
(
NC_013169.1
);
Phylum:
Actinobacteria
a:19:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_013169.1";i:2;s:33:"Kytococcus sedentarius DSM 20547 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:13:"154277-154404";i:6;s:1:"+";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:13:"154606-155992";i:10;s:1:"+";i:11;s:10:"Ksed_01550";i:12;s:36:"Riboflavin biosynthesis protein RibD";i:13;s:10:"Ksed_01550";i:14;s:6:"Operon";i:15;s:6:"608295";i:16;s:32:"Ksed_01550;Ksed_01560;Ksed_01570";i:17;s:44:"riboflavin biosynthetic process [GO:0009231]";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_013169.1";i:2;s:33:"Kytococcus sedentarius DSM 20547 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:13:"241801-241915";i:6;s:1:"+";i:7;s:6:"SAM-IV";i:8;s:0:"";i:9;s:13:"241945-242308";i:10;s:1:"+";i:11;s:10:"Ksed_02420";i:12;s:0:"";i:13;s:10:"Ksed_02420";i:14;s:11:"Single gene";i:15;s:7:"2671724";i:16;s:10:"Ksed_02420";i:17;s:0:"";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_013169.1";i:2;s:33:"Kytococcus sedentarius DSM 20547 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:13:"287141-287234";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:13:"288162-289044";i:10;s:1:"-";i:11;s:10:"Ksed_02970";i:12;s:65:"Predicted oxidoreductase; aryl-alcohol dehydrogenase like protein";i:13;s:10:"Ksed_02970";i:14;s:11:"Single gene";i:15;s:7:"2671743";i:16;s:10:"Ksed_02970";i:17;s:0:"";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_013169.1";i:2;s:33:"Kytococcus sedentarius DSM 20547 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:13:"289108-289202";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:13:"289255-289903";i:10;s:1:"+";i:11;s:10:"Ksed_02990";i:12;s:123:"Thiamine-phosphate synthase (TP synthase) (TPS) (Thiamine-phosphate pyrophosphorylase) (TMP pyrophosphorylase) (TMP-PPase)";i:13;s:10:"Ksed_02990";i:14;s:6:"Operon";i:15;s:6:"608321";i:16;s:21:"Ksed_02990;Ksed_03000";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_013169.1";i:2;s:33:"Kytococcus sedentarius DSM 20547 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:13:"374386-374542";i:6;s:1:"+";i:7;s:9:"ydaO-yuaA";i:8;s:0:"";i:9;s:13:"374548-375475";i:10;s:1:"+";i:11;s:10:"Ksed_03860";i:12;s:29:"Transglycosylase-like protein";i:13;s:10:"Ksed_03860";i:14;s:11:"Single gene";i:15;s:7:"2671766";i:16;s:10:"Ksed_03860";i:17;s:0:"";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_013169.1";i:2;s:33:"Kytococcus sedentarius DSM 20547 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:13:"375737-375890";i:6;s:1:"+";i:7;s:9:"ydaO-yuaA";i:8;s:0:"";i:9;s:13:"375896-376721";i:10;s:1:"+";i:11;s:10:"Ksed_03870";i:12;s:31:"Transglycosylase family protein";i:13;s:10:"Ksed_03870";i:14;s:11:"Single gene";i:15;s:7:"2671767";i:16;s:10:"Ksed_03870";i:17;s:0:"";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_013169.1";i:2;s:33:"Kytococcus sedentarius DSM 20547 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:13:"451553-451658";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:13:"451661-452840";i:10;s:1:"+";i:11;s:10:"Ksed_04580";i:12;s:59:"ABC transporter periplasmic binding protein; thiB subfamily";i:13;s:10:"Ksed_04580";i:14;s:6:"Operon";i:15;s:6:"608361";i:16;s:32:"Ksed_04580;Ksed_04590;Ksed_04600";i:17;s:31:"thiamine transport [GO:0015888]";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_013169.1";i:2;s:33:"Kytococcus sedentarius DSM 20547 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:13:"473050-473150";i:6;s:1:"+";i:7;s:3:"SAM";i:8;s:0:"";i:9;s:13:"473162-473300";i:10;s:1:"+";i:11;s:10:"Ksed_04780";i:12;s:0:"";i:13;s:10:"Ksed_04780";i:14;s:11:"Single gene";i:15;s:7:"2671794";i:16;s:10:"Ksed_04780";i:17;s:0:"";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_013169.1";i:2;s:33:"Kytococcus sedentarius DSM 20547 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"1095588-1095654";i:6;s:1:"+";i:7;s:3:"SAH";i:8;s:0:"";i:9;s:15:"1096186-1096447";i:10;s:1:"+";i:11;s:10:"Ksed_10700";i:12;s:0:"";i:13;s:10:"Ksed_10700";i:14;s:6:"Operon";i:15;s:6:"608489";i:16;s:38:"Ksed_10700;Ksed_10710;Ksed_10720(gltX)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_013169.1";i:2;s:33:"Kytococcus sedentarius DSM 20547 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"1537220-1537305";i:6;s:1:"-";i:7;s:7:"glycine";i:8;s:0:"";i:9;s:15:"1534188-1537146";i:10;s:1:"-";i:11;s:10:"Ksed_14930";i:12;s:151:"Glycine dehydrogenase (decarboxylating) (Glycine cleavage system P-protein) (Glycine decarboxylase) (Glycine dehydrogenase (aminomethyl-transferring))";i:13;s:10:"Ksed_14930";i:14;s:11:"Single gene";i:15;s:7:"2672109";i:16;s:10:"Ksed_14930";i:17;s:64:"glycine decarboxylation via glycine cleavage system [GO:0019464]";i:18;s:15:"View Structure ";}i:11;a:19:{i:0;i:11;i:1;s:11:"NC_013169.1";i:2;s:33:"Kytococcus sedentarius DSM 20547 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"1543196-1543409";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"1543448-1543907";i:10;s:1:"+";i:11;s:10:"Ksed_15050";i:12;s:18:"Acyl-CoA hydrolase";i:13;s:10:"Ksed_15050";i:14;s:6:"Operon";i:15;s:6:"608577";i:16;s:21:"Ksed_15050;Ksed_15060";i:17;s:0:"";i:18;s:15:"View Structure ";}i:12;a:19:{i:0;i:12;i:1;s:11:"NC_013169.1";i:2;s:33:"Kytococcus sedentarius DSM 20547 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"1583527-1583709";i:6;s:1:"+";i:7;s:9:"ydaO-yuaA";i:8;s:0:"";i:9;s:15:"1583757-1584198";i:10;s:1:"+";i:11;s:10:"Ksed_15430";i:12;s:59:"Cell wall-associated hydrolase; invasion-associated protein";i:13;s:10:"Ksed_15430";i:14;s:11:"Single gene";i:15;s:7:"2672122";i:16;s:10:"Ksed_15430";i:17;s:0:"";i:18;s:15:"View Structure ";}i:13;a:19:{i:0;i:13;i:1;s:11:"NC_013169.1";i:2;s:33:"Kytococcus sedentarius DSM 20547 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"1761094-1761186";i:6;s:1:"-";i:7;s:3:"SAM";i:8;s:0:"";i:9;s:15:"1759899-1760871";i:10;s:1:"-";i:11;s:10:"Ksed_17000";i:12;s:53:"ABC-type metal ion transport system; ATPase component";i:13;s:10:"Ksed_17000";i:14;s:6:"Operon";i:15;s:6:"608613";i:16;s:43:"Ksed_16970;Ksed_16980;Ksed_16990;Ksed_17000";i:17;s:33:"methionine transport [GO:0015821]";i:18;s:15:"View Structure ";}i:14;a:19:{i:0;i:14;i:1;s:11:"NC_013169.1";i:2;s:33:"Kytococcus sedentarius DSM 20547 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"1810251-1810368";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"1810505-1811708";i:10;s:1:"+";i:11;s:10:"Ksed_17430";i:12;s:0:"";i:13;s:10:"Ksed_17430";i:14;s:6:"Operon";i:15;s:6:"608624";i:16;s:65:"Ksed_17430;Ksed_17440;Ksed_17450;Ksed_17460;Ksed_17470;Ksed_17480";i:17;s:0:"";i:18;s:15:"View Structure ";}i:15;a:19:{i:0;i:15;i:1;s:11:"NC_013169.1";i:2;s:33:"Kytococcus sedentarius DSM 20547 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"2057634-2057743";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"2055894-2057559";i:10;s:1:"-";i:11;s:10:"Ksed_19710";i:12;s:176:"Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)";i:13;s:10:"Ksed_19710";i:14;s:11:"Single gene";i:15;s:7:"2672269";i:16;s:10:"Ksed_19710";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:16;a:19:{i:0;i:16;i:1;s:11:"NC_013169.1";i:2;s:33:"Kytococcus sedentarius DSM 20547 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"2059954-2060019";i:6;s:1:"-";i:7;s:8:"ykkC-III";i:8;s:0:"";i:9;s:15:"2059621-2059939";i:10;s:1:"-";i:11;s:10:"Ksed_19750";i:12;s:0:"";i:13;s:10:"Ksed_19750";i:14;s:11:"single gene";i:15;s:7:"2672272";i:16;s:10:"Ksed_19750";i:17;s:0:"";i:18;s:15:"View Structure ";}i:17;a:19:{i:0;i:17;i:1;s:11:"NC_013169.1";i:2;s:33:"Kytococcus sedentarius DSM 20547 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"2273160-2273365";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"2270331-2272959";i:10;s:1:"-";i:11;s:10:"Ksed_21940";i:12;s:37:"Ribonucleoside-diphosphate reductase ";i:13;s:10:"Ksed_21940";i:14;s:6:"Operon";i:15;s:6:"608723";i:16;s:21:"Ksed_21930;Ksed_21940";i:17;s:28:"DNA replication [GO:0006260]";i:18;s:15:"View Structure ";}i:18;a:19:{i:0;i:18;i:1;s:11:"NC_013169.1";i:2;s:33:"Kytococcus sedentarius DSM 20547 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"2652567-2652653";i:6;s:1:"-";i:7;s:8:"fluoride";i:8;s:0:"";i:9;s:15:"2650330-2651929";i:10;s:1:"+";i:11;s:10:"Ksed_25810";i:12;s:43:"Putative exporter of polyketide antibiotics";i:13;s:10:"Ksed_25810";i:14;s:6:"Operon";i:15;s:6:"608800";i:16;s:21:"Ksed_25800;Ksed_25810";i:17;s:0:"";i:18;s:15:"View Structure ";}}