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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
682427-682595
(+)
lysine
682658-684236 (+)
Shel_05850
Na+/H+ antiporter
Shel_05850
Single gene
DOOR ID:
2669789
Shel_05850
View Structure
2
823050-823183
(+)
FMN
823308-824424 (+)
Shel_07090
Riboflavin biosynthesis protein RibD [Includes: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (DRAP deaminase) (93) (HTP reductase)]
Shel_07090
Operon
DOOR ID:
607300
Shel_07090,
Shel_07100,
Shel_07110,
Shel_07120
View Structure
3
1567478-1567591
(-)
TPP
1567072-1567405 (-)
Shel_13680
Shel_13680
Single gene
DOOR ID:
2670086
Shel_13680
View Structure
4
1971053-1971225
(+)
lysine
1971285-1973655 (+)
Shel_17440
Pyruvate-formate lyase
Shel_17440
Operon
DOOR ID:
607504
Shel_17440,
Shel_17450,
Shel_17460
View Structure
5
2020896-2020985
(-)
glycine
2019316-2020795 (-)
Shel_17880
Amino acid carrier protein
Shel_17880
Single gene
DOOR ID:
2670231
Shel_17880
View Structure
6
2079115-2079218
(+)
ykkC-yxkD
2079260-2080568 (+)
Shel_18540
Putative efflux protein; MATE family
Shel_18540
Single gene
DOOR ID:
2670256
Shel_18540
View Structure
7
2164884-2164979
(+)
Nico
2165065-2165962 (+)
Shel_19310
Cation diffusion facilitator family transporter
Shel_19310
Single gene
DOOR ID:
2670285
Shel_19310
View Structure
8
2648115-2648201
(-)
ZMP-ZTP
2647405-2648032 (-)
Shel_23870
IMP cyclohydrolase
Shel_23870
Operon
DOOR ID:
607633
Shel_23860,
Shel_23870
View Structure
9
2663348-2663486
(+)
FMN
2663601-2664165 (+)
Shel_24050
Riboflavin transporter
Shel_24050
Operon
DOOR ID:
607637
Shel_24050,
Shel_24060,
Shel_24070,
Shel_24080
View Structure
10
2795474-2795577
(-)
glycine
2794005-2795151 (-)
Shel_25260
Uncharacterized membrane protein
Shel_25260
Single gene
DOOR ID:
2670539
Shel_25260
View Structure
11
3123525-3123690
(-)
lysine
3122164-3123463 (-)
Shel_28180
Diaminopimelate decarboxylase
Shel_28180
Operon
DOOR ID:
607715
Shel_28150,
Shel_28160,
Shel_28170,
Shel_28180
View Structure
Genome:
Slackia heliotrinireducens DSM 20476
(
NC_013165.1
);
Phylum:
Actinobacteria
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MATE family";i:13;s:10:"Shel_18540";i:14;s:11:"Single gene";i:15;s:7:"2670256";i:16;s:10:"Shel_18540";i:17;s:0:"";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_013165.1";i:2;s:37:"Slackia heliotrinireducens DSM 20476 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"2164884-2164979";i:6;s:1:"+";i:7;s:4:"Nico";i:8;s:0:"";i:9;s:15:"2165065-2165962";i:10;s:1:"+";i:11;s:10:"Shel_19310";i:12;s:47:"Cation diffusion facilitator family transporter";i:13;s:10:"Shel_19310";i:14;s:11:"Single gene";i:15;s:7:"2670285";i:16;s:10:"Shel_19310";i:17;s:0:"";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_013165.1";i:2;s:37:"Slackia heliotrinireducens DSM 20476 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"2648115-2648201";i:6;s:1:"-";i:7;s:7:"ZMP-ZTP";i:8;s:0:"";i:9;s:15:"2647405-2648032";i:10;s:1:"-";i:11;s:10:"Shel_23870";i:12;s:18:"IMP cyclohydrolase";i:13;s:10:"Shel_23870";i:14;s:6:"Operon";i:15;s:6:"607633";i:16;s:21:"Shel_23860;Shel_23870";i:17;s:37:"IMP biosynthetic process [GO:0006188]";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_013165.1";i:2;s:37:"Slackia heliotrinireducens DSM 20476 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"2663348-2663486";i:6;s:1:"+";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"2663601-2664165";i:10;s:1:"+";i:11;s:10:"Shel_24050";i:12;s:22:"Riboflavin transporter";i:13;s:10:"Shel_24050";i:14;s:6:"Operon";i:15;s:6:"607637";i:16;s:43:"Shel_24050;Shel_24060;Shel_24070;Shel_24080";i:17;s:0:"";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_013165.1";i:2;s:37:"Slackia heliotrinireducens DSM 20476 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"2795474-2795577";i:6;s:1:"-";i:7;s:7:"glycine";i:8;s:0:"";i:9;s:15:"2794005-2795151";i:10;s:1:"-";i:11;s:10:"Shel_25260";i:12;s:32:"Uncharacterized membrane protein";i:13;s:10:"Shel_25260";i:14;s:11:"Single gene";i:15;s:7:"2670539";i:16;s:10:"Shel_25260";i:17;s:0:"";i:18;s:15:"View Structure ";}i:11;a:19:{i:0;i:11;i:1;s:11:"NC_013165.1";i:2;s:37:"Slackia heliotrinireducens DSM 20476 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"3123525-3123690";i:6;s:1:"-";i:7;s:6:"lysine";i:8;s:0:"";i:9;s:15:"3122164-3123463";i:10;s:1:"-";i:11;s:10:"Shel_28180";i:12;s:29:"Diaminopimelate decarboxylase";i:13;s:10:"Shel_28180";i:14;s:6:"Operon";i:15;s:6:"607715";i:16;s:43:"Shel_28150;Shel_28160;Shel_28170;Shel_28180";i:17;s:60:"lysine biosynthetic process via diaminopimelate [GO:0009089]";i:18;s:15:"View Structure ";}}
