About
Search
Advanced Search
Genomes
Predict
About us
S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
176760-176819
(+)
ykkC-III
176836-177151 (+)
Svir_01660
Svir_01660
single gene
DOOR ID:
2665037
Svir_01660
View Structure
2
1305332-1305465
(-)
SAM
1304057-1305320 (-)
Svir_12610
L-threonine synthase
Svir_12610
Single gene
DOOR ID:
2665421
Svir_12610
View Structure
3
1369622-1369714
(+)
glycine
1369857-1372767 (+)
Svir_13320
Glycine dehydrogenase (decarboxylating) (Glycine cleavage system P-protein) (Glycine decarboxylase) (Glycine dehydrogenase (aminomethyl-transferring))
Svir_13320
Operon
DOOR ID:
605279
Svir_13320,
Svir_13330
(gcvT)
,
Svir_13340,
Svir_13350
View Structure
4
1829471-1829655
(-)
cobalamin
1828418-1829417 (-)
Svir_17630
ABC-type Fe3+-hydroxamate transport system; periplasmic component
Svir_17630
Operon
DOOR ID:
605359
Svir_17580,
Svir_17590
(cobN)
,
Svir_17600,
Svir_17610,
Svir_17620,
Svir_17630
View Structure
5
1844178-1844323
(-)
cobalamin
1842107-1844132 (-)
Svir_17760
Protoporphyrin IX magnesium-chelatase
Svir_17760
Operon
DOOR ID:
605363
Svir_17720,
Svir_17730,
Svir_17740,
Svir_17750,
Svir_17760
View Structure
6
3044047-3044222
(+)
AdoCbl
3044277-3045213 (+)
Svir_28050
ABC-type Fe3+-hydroxamate transport system; periplasmic component
Svir_28050
Operon
DOOR ID:
605558
Svir_28050,
Svir_28060
View Structure
7
3390386-3390496
(-)
TPP
3389288-3390362 (-)
Svir_31210
ABC transporter periplasmic binding protein; thiB subfamily
Svir_31210
Operon
DOOR ID:
605623
Svir_31190,
Svir_31200,
Svir_31210
View Structure
8
3521006-3521110
(-)
SAM
3519790-3520798 (-)
Svir_32450
ABC-type metal ion transport system; ATPase component
Svir_32450
Operon
DOOR ID:
605645
Svir_32420,
Svir_32430,
Svir_32440,
Svir_32450
View Structure
9
3761172-3761301
(+)
TPP
3761306-3762953 (+)
Svir_34570
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
Svir_34570
Operon
DOOR ID:
605687
Svir_34570,
Svir_34580,
Svir_34590
View Structure
10
3770892-3770996
(-)
TPP
3769758-3770886 (-)
Svir_34650
Glycine oxidase
Svir_34650
Operon
DOOR ID:
605688
Svir_34630,
Svir_34640,
Svir_34650
View Structure
Genome:
Saccharomonospora viridis DSM 43017
(
NC_013159.1
);
Phylum:
Actinobacteria
a:11:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_013159.1";i:2;s:36:"Saccharomonospora viridis DSM 43017 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:13:"176760-176819";i:6;s:1:"+";i:7;s:8:"ykkC-III";i:8;s:0:"";i:9;s:13:"176836-177151";i:10;s:1:"+";i:11;s:10:"Svir_01660";i:12;s:0:"";i:13;s:10:"Svir_01660";i:14;s:11:"single gene";i:15;s:7:"2665037";i:16;s:10:"Svir_01660";i:17;s:0:"";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_013159.1";i:2;s:36:"Saccharomonospora viridis DSM 43017 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"1305332-1305465";i:6;s:1:"-";i:7;s:3:"SAM";i:8;s:0:"";i:9;s:15:"1304057-1305320";i:10;s:1:"-";i:11;s:10:"Svir_12610";i:12;s:20:"L-threonine synthase";i:13;s:10:"Svir_12610";i:14;s:11:"Single gene";i:15;s:7:"2665421";i:16;s:10:"Svir_12610";i:17;s:0:"";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_013159.1";i:2;s:36:"Saccharomonospora viridis DSM 43017 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"1369622-1369714";i:6;s:1:"+";i:7;s:7:"glycine";i:8;s:0:"";i:9;s:15:"1369857-1372767";i:10;s:1:"+";i:11;s:10:"Svir_13320";i:12;s:151:"Glycine dehydrogenase (decarboxylating) (Glycine cleavage system P-protein) (Glycine decarboxylase) (Glycine dehydrogenase (aminomethyl-transferring))";i:13;s:10:"Svir_13320";i:14;s:6:"Operon";i:15;s:6:"605279";i:16;s:49:"Svir_13320;Svir_13330(gcvT);Svir_13340;Svir_13350";i:17;s:64:"glycine decarboxylation via glycine cleavage system [GO:0019464]";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_013159.1";i:2;s:36:"Saccharomonospora viridis DSM 43017 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"1829471-1829655";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"1828418-1829417";i:10;s:1:"-";i:11;s:10:"Svir_17630";i:12;s:65:"ABC-type Fe3+-hydroxamate transport system; periplasmic component";i:13;s:10:"Svir_17630";i:14;s:6:"Operon";i:15;s:6:"605359";i:16;s:71:"Svir_17580;Svir_17590(cobN);Svir_17600;Svir_17610;Svir_17620;Svir_17630";i:17;s:0:"";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_013159.1";i:2;s:36:"Saccharomonospora viridis DSM 43017 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"1844178-1844323";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"1842107-1844132";i:10;s:1:"-";i:11;s:10:"Svir_17760";i:12;s:37:"Protoporphyrin IX magnesium-chelatase";i:13;s:10:"Svir_17760";i:14;s:6:"Operon";i:15;s:6:"605363";i:16;s:54:"Svir_17720;Svir_17730;Svir_17740;Svir_17750;Svir_17760";i:17;s:0:"";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_013159.1";i:2;s:36:"Saccharomonospora viridis DSM 43017 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"3044047-3044222";i:6;s:1:"+";i:7;s:6:"AdoCbl";i:8;s:0:"";i:9;s:15:"3044277-3045213";i:10;s:1:"+";i:11;s:10:"Svir_28050";i:12;s:65:"ABC-type Fe3+-hydroxamate transport system; periplasmic component";i:13;s:10:"Svir_28050";i:14;s:6:"Operon";i:15;s:6:"605558";i:16;s:21:"Svir_28050;Svir_28060";i:17;s:0:"";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_013159.1";i:2;s:36:"Saccharomonospora viridis DSM 43017 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"3390386-3390496";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"3389288-3390362";i:10;s:1:"-";i:11;s:10:"Svir_31210";i:12;s:59:"ABC transporter periplasmic binding protein; thiB subfamily";i:13;s:10:"Svir_31210";i:14;s:6:"Operon";i:15;s:6:"605623";i:16;s:32:"Svir_31190;Svir_31200;Svir_31210";i:17;s:31:"thiamine transport [GO:0015888]";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_013159.1";i:2;s:36:"Saccharomonospora viridis DSM 43017 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"3521006-3521110";i:6;s:1:"-";i:7;s:3:"SAM";i:8;s:0:"";i:9;s:15:"3519790-3520798";i:10;s:1:"-";i:11;s:10:"Svir_32450";i:12;s:53:"ABC-type metal ion transport system; ATPase component";i:13;s:10:"Svir_32450";i:14;s:6:"Operon";i:15;s:6:"605645";i:16;s:43:"Svir_32420;Svir_32430;Svir_32440;Svir_32450";i:17;s:33:"methionine transport [GO:0015821]";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_013159.1";i:2;s:36:"Saccharomonospora viridis DSM 43017 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"3761172-3761301";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"3761306-3762953";i:10;s:1:"+";i:11;s:10:"Svir_34570";i:12;s:176:"Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)";i:13;s:10:"Svir_34570";i:14;s:6:"Operon";i:15;s:6:"605687";i:16;s:32:"Svir_34570;Svir_34580;Svir_34590";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_013159.1";i:2;s:36:"Saccharomonospora viridis DSM 43017 ";i:3;s:14:"Actinobacteria";i:4;s:6:"201174";i:5;s:15:"3770892-3770996";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"3769758-3770886";i:10;s:1:"-";i:11;s:10:"Svir_34650";i:12;s:15:"Glycine oxidase";i:13;s:10:"Svir_34650";i:14;s:6:"Operon";i:15;s:6:"605688";i:16;s:32:"Svir_34630;Svir_34640;Svir_34650";i:17;s:0:"";i:18;s:15:"View Structure ";}}