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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
757635-757743
(+)
TPP
757827-758031 (+)
Cpin_0620
Thiamine biosynthesis protein ThiS
Cpin_0620
Single gene
DOOR ID:
2660086
Cpin_0620
View Structure
2
2395847-2395966
(-)
SAM
2394511-2395690 (-)
Cpin_1963
Cystathionine gamma-lyase
Cpin_1963
Single gene
DOOR ID:
2660676
Cpin_1963
View Structure
3
3865219-3865412
(-)
cobalamin
3862618-3864949 (-)
Cpin_3133
TonB-dependent siderophore receptor
Cpin_3133
Operon
DOOR ID:
603354
Cpin_3132,
Cpin_3133
View Structure
4
4896479-4896690
(+)
cobalamin
4896851-4897904 (+)
Cpin_3940
Cpin_3940
Single gene
DOOR ID:
2661554
Cpin_3940
View Structure
5
4958750-4958860
(+)
SAM
4959024-4960197 (+)
Cpin_3986
Cystathionine gamma-lyase
Cpin_3986
Operon
DOOR ID:
603505
Cpin_3986,
Cpin_3987,
Cpin_3988
View Structure
6
4998418-4998502
(+)
fluoride
4999869-5000823 (+)
Cpin_4019
Alcohol dehydrogenase GroES domain protein
Cpin_4019
Operon
DOOR ID:
603511
Cpin_4018,
Cpin_4019
View Structure
7
5051725-5051830
(+)
TPP
5052060-5053338 (+)
Cpin_4062
Sodium/hydrogen exchanger
Cpin_4062
Single gene
DOOR ID:
2661620
Cpin_4062
View Structure
8
5561903-5562104
(+)
cobalamin
5562246-5562612 (+)
Cpin_4470
Cpin_4470
Operon
DOOR ID:
603594
Cpin_4470,
Cpin_4471,
Cpin_4472,
Cpin_4473,
Cpin_4474,
Cpin_4475,
Cpin_4476,
Cpin_4477,
Cpin_4478,
Cpin_4479,
Cpin_4480,
Cpin_4481
View Structure
9
7652526-7652719
(+)
cobalamin
7653104-7654250 (+)
Cpin_6055
Cpin_6055
Single gene
DOOR ID:
2662566
Cpin_6055
View Structure
10
8141141-8141352
(+)
cobalamin
8141510-8143820 (+)
Cpin_6481
5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (4) (Cobalamin-independent methionine synthase) (Methionine synthase; vitamin-B12 independent isozyme)
Cpin_6481
Single gene
DOOR ID:
2662785
Cpin_6481
View Structure
11
8209890-8209982
(+)
TPP
8210044-8212420 (+)
Cpin_6547
TonB-dependent receptor
Cpin_6547
Operon
DOOR ID:
603970
Cpin_6547,
Cpin_6548,
Cpin_6549
View Structure
Genome:
Chitinophaga pinensis DSM 2588
(
NC_013132.1
);
Phylum:
Bacteroidetes/Chlorobi group
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vitamin-B12 independent isozyme)";i:13;s:9:"Cpin_6481";i:14;s:11:"Single gene";i:15;s:7:"2662785";i:16;s:9:"Cpin_6481";i:17;s:44:"methionine biosynthetic process [GO:0009086]";i:18;s:15:"View Structure ";}i:11;a:19:{i:0;i:11;i:1;s:11:"NC_013132.1";i:2;s:31:"Chitinophaga pinensis DSM 2588 ";i:3;s:28:"Bacteroidetes/Chlorobi group";i:4;s:5:"68336";i:5;s:15:"8209890-8209982";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"8210044-8212420";i:10;s:1:"+";i:11;s:9:"Cpin_6547";i:12;s:23:"TonB-dependent receptor";i:13;s:9:"Cpin_6547";i:14;s:6:"Operon";i:15;s:6:"603970";i:16;s:29:"Cpin_6547;Cpin_6548;Cpin_6549";i:17;s:0:"";i:18;s:15:"View Structure ";}}
