About
Search
Advanced Search
Genomes
Predict
About us
S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
145025-145156
(-)
TPP
141892-142525 (-)
Phep_0119
Thiamine-phosphate diphosphorylase
Phep_0119
Operon
DOOR ID:
597122
Phep_0118,
Phep_0119,
Phep_0120
View Structure
2
2169002-2169115
(-)
SAM
2167470-2168775 (-)
Phep_1875
O-acetylhomoserine/O-acetylserine sulfhydrylase (9)
Phep_1875
Operon
DOOR ID:
597505
Phep_1873,
Phep_1874,
Phep_1875
View Structure
3
2218118-2218319
(+)
cobalamin
2218414-2220478 (+)
Phep_1918
TonB-dependent receptor
Phep_1918
Operon
DOOR ID:
597516
Phep_1918,
Phep_1919,
Phep_1920,
Phep_1921,
Phep_1922
View Structure
4
2860062-2860149
(+)
TPP
2860221-2860422 (+)
Phep_2465
Thiamine biosynthesis protein ThiS
Phep_2465
Single gene
DOOR ID:
2649461
Phep_2465
View Structure
5
4562963-4563072
(+)
SAM
4563187-4566847 (+)
Phep_3799
Methionine synthase (3) (5-methyltetrahydrofolate--homocysteine methyltransferase)
Phep_3799
Operon
DOOR ID:
597900
Phep_3799,
Phep_3800
View Structure
Genome:
Pedobacter heparinus DSM 2366
(
NC_013061.1
);
Phylum:
Bacteroidetes/Chlorobi group
a:6:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_013061.1";i:2;s:30:"Pedobacter heparinus DSM 2366 ";i:3;s:28:"Bacteroidetes/Chlorobi group";i:4;s:5:"68336";i:5;s:13:"145025-145156";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:13:"141892-142525";i:10;s:1:"-";i:11;s:9:"Phep_0119";i:12;s:34:"Thiamine-phosphate diphosphorylase";i:13;s:9:"Phep_0119";i:14;s:6:"Operon";i:15;s:6:"597122";i:16;s:29:"Phep_0118;Phep_0119;Phep_0120";i:17;s:0:"";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_013061.1";i:2;s:30:"Pedobacter heparinus DSM 2366 ";i:3;s:28:"Bacteroidetes/Chlorobi group";i:4;s:5:"68336";i:5;s:15:"2169002-2169115";i:6;s:1:"-";i:7;s:3:"SAM";i:8;s:0:"";i:9;s:15:"2167470-2168775";i:10;s:1:"-";i:11;s:9:"Phep_1875";i:12;s:51:"O-acetylhomoserine/O-acetylserine sulfhydrylase (9)";i:13;s:9:"Phep_1875";i:14;s:6:"Operon";i:15;s:6:"597505";i:16;s:29:"Phep_1873;Phep_1874;Phep_1875";i:17;s:0:"";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_013061.1";i:2;s:30:"Pedobacter heparinus DSM 2366 ";i:3;s:28:"Bacteroidetes/Chlorobi group";i:4;s:5:"68336";i:5;s:15:"2218118-2218319";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"2218414-2220478";i:10;s:1:"+";i:11;s:9:"Phep_1918";i:12;s:23:"TonB-dependent receptor";i:13;s:9:"Phep_1918";i:14;s:6:"Operon";i:15;s:6:"597516";i:16;s:49:"Phep_1918;Phep_1919;Phep_1920;Phep_1921;Phep_1922";i:17;s:0:"";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_013061.1";i:2;s:30:"Pedobacter heparinus DSM 2366 ";i:3;s:28:"Bacteroidetes/Chlorobi group";i:4;s:5:"68336";i:5;s:15:"2860062-2860149";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"2860221-2860422";i:10;s:1:"+";i:11;s:9:"Phep_2465";i:12;s:34:"Thiamine biosynthesis protein ThiS";i:13;s:9:"Phep_2465";i:14;s:11:"Single gene";i:15;s:7:"2649461";i:16;s:9:"Phep_2465";i:17;s:0:"";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_013061.1";i:2;s:30:"Pedobacter heparinus DSM 2366 ";i:3;s:28:"Bacteroidetes/Chlorobi group";i:4;s:5:"68336";i:5;s:15:"4562963-4563072";i:6;s:1:"+";i:7;s:3:"SAM";i:8;s:0:"";i:9;s:15:"4563187-4566847";i:10;s:1:"+";i:11;s:9:"Phep_3799";i:12;s:82:"Methionine synthase (3) (5-methyltetrahydrofolate--homocysteine methyltransferase)";i:13;s:9:"Phep_3799";i:14;s:6:"Operon";i:15;s:6:"597900";i:16;s:19:"Phep_3799;Phep_3800";i:17;s:60:"pteridine-containing compound metabolic process [GO:0042558]";i:18;s:15:"View Structure ";}}
