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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
80311-80410
(-)
TPP
79296-80280 (-)
tbpA
ECSP_0072
Operon
DOOR ID:
594597
ECSP_0070
(thiQ)
,
ECSP_0071
(thiP)
,
ECSP_0072
(tbpA)
View Structure
2
944235-944379
(+)
MOCO
945377-945890 (+)
moaB
ECSP_0878
Operon
DOOR ID:
594752
ECSP_0877
(moaA)
,
ECSP_0878
(moaB)
,
ECSP_0879
(moaC)
,
ECSP_0880
(moaD)
,
ECSP_0881
(moaE)
View Structure
3
2412560-2412661
(+)
yybP-ykoY
2412792-2413359 (+)
yebN
ECSP_2394
Single gene
DOOR ID:
2643679
ECSP_2394
(yebN)
View Structure
4
2854643-2854739
(-)
TPP
2853819-2854608 (-)
thiM
ECSP_2899
Operon
DOOR ID:
595119
ECSP_2896
(yegW)
,
ECSP_2897
(yegX)
,
ECSP_2898
(thiD)
,
ECSP_2899
(thiM)
View Structure
5
3989788-3989936
(-)
FMN
3989030-3989684 (-)
ribB
ECSP_4020
Single gene
DOOR ID:
2644204
ECSP_4020
(ribB)
View Structure
6
5031822-5032012
(+)
cobalamin
5032076-5033921 (+)
btuB
ECSP_5037
Operon
DOOR ID:
595538
ECSP_5037
(btuB)
,
ECSP_5038
(murI)
View Structure
7
5064178-5064278
(-)
TPP
5062201-5064097 (-)
thiC
ECSP_5064
Operon
DOOR ID:
595544
ECSP_5062
(thiF)
,
ECSP_5063
(thiE)
,
ECSP_5064
(thiC)
View Structure
8
5106999-5107195
(-)
lysine
5105557-5106907 (-)
lysC
ECSP_5100
Single gene
DOOR ID:
2644573
ECSP_5100
(lysC)
View Structure
9
5262353-5262399
(+)
mini-ykkC
5262416-5262734 (+)
sugE
ECSP_5250
Single gene
DOOR ID:
2644643
ECSP_5250
(sugE)
View Structure
10
5354198-5354313
(+)
Mg sensor
5354406-5357103 (+)
mgtA
ECSP_5344
Single gene
DOOR ID:
2644688
ECSP_5344
(mgtA)
View Structure
Genome:
Escherichia coli O157:H7 str. TW14359
(
NC_013008.1
);
Phylum:
Gammaproteobacteria
a:11:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_013008.1";i:2;s:38:"Escherichia coli O157:H7 str. TW14359 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:11:"80311-80410";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:11:"79296-80280";i:10;s:1:"-";i:11;s:4:"tbpA";i:12;s:0:"";i:13;s:9:"ECSP_0072";i:14;s:6:"Operon";i:15;s:6:"594597";i:16;s:47:"ECSP_0070(thiQ);ECSP_0071(thiP);ECSP_0072(tbpA)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_013008.1";i:2;s:38:"Escherichia coli O157:H7 str. TW14359 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:13:"944235-944379";i:6;s:1:"+";i:7;s:4:"MOCO";i:8;s:0:"";i:9;s:13:"945377-945890";i:10;s:1:"+";i:11;s:4:"moaB";i:12;s:0:"";i:13;s:9:"ECSP_0878";i:14;s:6:"Operon";i:15;s:6:"594752";i:16;s:79:"ECSP_0877(moaA);ECSP_0878(moaB);ECSP_0879(moaC);ECSP_0880(moaD);ECSP_0881(moaE)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_013008.1";i:2;s:38:"Escherichia coli O157:H7 str. TW14359 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"2412560-2412661";i:6;s:1:"+";i:7;s:9:"yybP-ykoY";i:8;s:0:"";i:9;s:15:"2412792-2413359";i:10;s:1:"+";i:11;s:4:"yebN";i:12;s:0:"";i:13;s:9:"ECSP_2394";i:14;s:11:"Single gene";i:15;s:7:"2643679";i:16;s:15:"ECSP_2394(yebN)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_013008.1";i:2;s:38:"Escherichia coli O157:H7 str. TW14359 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"2854643-2854739";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"2853819-2854608";i:10;s:1:"-";i:11;s:4:"thiM";i:12;s:0:"";i:13;s:9:"ECSP_2899";i:14;s:6:"Operon";i:15;s:6:"595119";i:16;s:63:"ECSP_2896(yegW);ECSP_2897(yegX);ECSP_2898(thiD);ECSP_2899(thiM)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_013008.1";i:2;s:38:"Escherichia coli O157:H7 str. TW14359 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"3989788-3989936";i:6;s:1:"-";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"3989030-3989684";i:10;s:1:"-";i:11;s:4:"ribB";i:12;s:0:"";i:13;s:9:"ECSP_4020";i:14;s:11:"Single gene";i:15;s:7:"2644204";i:16;s:15:"ECSP_4020(ribB)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_013008.1";i:2;s:38:"Escherichia coli O157:H7 str. TW14359 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"5031822-5032012";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"5032076-5033921";i:10;s:1:"+";i:11;s:4:"btuB";i:12;s:0:"";i:13;s:9:"ECSP_5037";i:14;s:6:"Operon";i:15;s:6:"595538";i:16;s:31:"ECSP_5037(btuB);ECSP_5038(murI)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_013008.1";i:2;s:38:"Escherichia coli O157:H7 str. TW14359 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"5064178-5064278";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"5062201-5064097";i:10;s:1:"-";i:11;s:4:"thiC";i:12;s:0:"";i:13;s:9:"ECSP_5064";i:14;s:6:"Operon";i:15;s:6:"595544";i:16;s:47:"ECSP_5062(thiF);ECSP_5063(thiE);ECSP_5064(thiC)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_013008.1";i:2;s:38:"Escherichia coli O157:H7 str. TW14359 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"5106999-5107195";i:6;s:1:"-";i:7;s:6:"lysine";i:8;s:0:"";i:9;s:15:"5105557-5106907";i:10;s:1:"-";i:11;s:4:"lysC";i:12;s:0:"";i:13;s:9:"ECSP_5100";i:14;s:11:"Single gene";i:15;s:7:"2644573";i:16;s:15:"ECSP_5100(lysC)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_013008.1";i:2;s:38:"Escherichia coli O157:H7 str. TW14359 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"5262353-5262399";i:6;s:1:"+";i:7;s:9:"mini-ykkC";i:8;s:0:"";i:9;s:15:"5262416-5262734";i:10;s:1:"+";i:11;s:4:"sugE";i:12;s:0:"";i:13;s:9:"ECSP_5250";i:14;s:11:"Single gene";i:15;s:7:"2644643";i:16;s:15:"ECSP_5250(sugE)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_013008.1";i:2;s:38:"Escherichia coli O157:H7 str. TW14359 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"5354198-5354313";i:6;s:1:"+";i:7;s:9:"Mg sensor";i:8;s:0:"";i:9;s:15:"5354406-5357103";i:10;s:1:"+";i:11;s:4:"mgtA";i:12;s:0:"";i:13;s:9:"ECSP_5344";i:14;s:11:"Single gene";i:15;s:7:"2644688";i:16;s:15:"ECSP_5344(mgtA)";i:17;s:0:"";i:18;s:15:"View Structure ";}}