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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
140945-141043
(-)
yybP-ykoY
140282-140858 (-)
TERTU_0128
Integral membrane protein
TERTU_0128
Single gene
DOOR ID:
2640959
TERTU_0128
View Structure
2
634815-634901
(-)
c-di-GMP-I
633435-634722 (-)
TERTU_0617
HD-GYP domain containing protein
TERTU_0617
single gene
DOOR ID:
2641151
TERTU_0617
View Structure
3
1306379-1306491
(+)
TPP
1306555-1308700 (+)
TERTU_1246
Outer membrane protein
TERTU_1246
Operon
DOOR ID:
593990
TERTU_1246,
TERTU_1247,
TERTU_1248,
TERTU_1249
View Structure
4
2692448-2692579
(-)
cobalamin
2691686-2692289 (-)
cobO
Cob(I)yrinic acid a;c-diamide adenosyltransferase (7) (Cob(I)alamin adenosyltransferase) (Corrinoid adenosyltransferase)
TERTU_2422
Operon
DOOR ID:
594180
TERTU_2419,
TERTU_2421,
TERTU_2422
(cobO)
View Structure
5
2895555-2895654
(+)
TPP
2896784-2897000 (+)
thiS
Thiamine biosynthesis protein ThiS
TERTU_2622
Operon
DOOR ID:
594219
TERTU_2621,
TERTU_2622
(thiS)
,
TERTU_2623
(thiG)
,
TERTU_2624
View Structure
6
3538516-3538656
(+)
MOCO
3539639-3540149 (+)
moaB
Molybdenum cofactor biosynthesis protein B
TERTU_3186
Operon
DOOR ID:
594320
TERTU_3185
(moaA)
,
TERTU_3186
(moaB)
View Structure
7
3679804-3680033
(-)
cobalamin
3675176-3679628 (-)
cobN
CobN/magnesium chelatase
TERTU_3326
Operon
DOOR ID:
594350
TERTU_3325,
TERTU_3326
(cobN)
View Structure
8
3854160-3854312
(+)
ykkC-yxkD
3854415-3855525 (+)
TERTU_3480
ABC transporter periplasmic binding protein; urea carboxylase region
TERTU_3480
Operon
DOOR ID:
594375
TERTU_3479,
TERTU_3480,
TERTU_3481,
TERTU_3482,
TERTU_3483,
TERTU_3484,
TERTU_3485
(uca)
,
TERTU_3486
(atzF)
View Structure
9
4011051-4011193
(+)
cobalamin
4011298-4013170 (+)
TERTU_3613
TonB-dependent receptor
TERTU_3613
Operon
DOOR ID:
594397
TERTU_3613,
TERTU_3614
(cobQ)
,
TERTU_3615
(cobPU)
,
TERTU_3616
(cobT)
,
TERTU_3617,
TERTU_3618
(cobS)
,
TERTU_3620
View Structure
10
4335006-4335096
(-)
TPP
4334146-4334971 (-)
thiD
Phosphomethylpyrimidine kinase
TERTU_3925
Single gene
DOOR ID:
2642391
TERTU_3925
(thiD)
View Structure
Genome:
Teredinibacter turnerae T7901
(
NC_012997.1
);
Phylum:
Gammaproteobacteria
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porphyrin-containing compound biosynthetic process [GO:0006779]";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_012997.1";i:2;s:30:"Teredinibacter turnerae T7901 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"2895555-2895654";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"2896784-2897000";i:10;s:1:"+";i:11;s:4:"thiS";i:12;s:34:"Thiamine biosynthesis protein ThiS";i:13;s:10:"TERTU_2622";i:14;s:6:"Operon";i:15;s:6:"594219";i:16;s:55:"TERTU_2621;TERTU_2622(thiS);TERTU_2623(thiG);TERTU_2624";i:17;s:0:"";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_012997.1";i:2;s:30:"Teredinibacter turnerae T7901 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"3538516-3538656";i:6;s:1:"+";i:7;s:4:"MOCO";i:8;s:0:"";i:9;s:15:"3539639-3540149";i:10;s:1:"+";i:11;s:4:"moaB";i:12;s:42:"Molybdenum cofactor biosynthesis protein B";i:13;s:10:"TERTU_3186";i:14;s:6:"Operon";i:15;s:6:"594320";i:16;s:33:"TERTU_3185(moaA);TERTU_3186(moaB)";i:17;s:59:"Mo-molybdopterin cofactor biosynthetic process [GO:0006777]";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_012997.1";i:2;s:30:"Teredinibacter turnerae T7901 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"3679804-3680033";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"3675176-3679628";i:10;s:1:"-";i:11;s:4:"cobN";i:12;s:25:"CobN/magnesium chelatase ";i:13;s:10:"TERTU_3326";i:14;s:6:"Operon";i:15;s:6:"594350";i:16;s:27:"TERTU_3325;TERTU_3326(cobN)";i:17;s:33:"biosynthetic process [GO:0009058]";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_012997.1";i:2;s:30:"Teredinibacter turnerae T7901 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"3854160-3854312";i:6;s:1:"+";i:7;s:9:"ykkC-yxkD";i:8;s:0:"";i:9;s:15:"3854415-3855525";i:10;s:1:"+";i:11;s:10:"TERTU_3480";i:12;s:68:"ABC transporter periplasmic binding protein; urea carboxylase region";i:13;s:10:"TERTU_3480";i:14;s:6:"Operon";i:15;s:6:"594375";i:16;s:98:"TERTU_3479;TERTU_3480;TERTU_3481;TERTU_3482;TERTU_3483;TERTU_3484;TERTU_3485(uca);TERTU_3486(atzF)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_012997.1";i:2;s:30:"Teredinibacter turnerae T7901 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"4011051-4011193";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"4011298-4013170";i:10;s:1:"+";i:11;s:10:"TERTU_3613";i:12;s:23:"TonB-dependent receptor";i:13;s:10:"TERTU_3613";i:14;s:6:"Operon";i:15;s:6:"594397";i:16;s:101:"TERTU_3613;TERTU_3614(cobQ);TERTU_3615(cobPU);TERTU_3616(cobT);TERTU_3617;TERTU_3618(cobS);TERTU_3620";i:17;s:0:"";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_012997.1";i:2;s:30:"Teredinibacter turnerae T7901 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"4335006-4335096";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"4334146-4334971";i:10;s:1:"-";i:11;s:4:"thiD";i:12;s:31:"Phosphomethylpyrimidine kinase ";i:13;s:10:"TERTU_3925";i:14;s:11:"Single gene";i:15;s:7:"2642391";i:16;s:16:"TERTU_3925(thiD)";i:17;s:42:"thiamine biosynthetic process [GO:0009228]";i:18;s:15:"View Structure ";}}
