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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
78316-78415
(-)
TPP
77301-78285 (-)
tbpA
ECD_00070
Operon
DOOR ID:
590252
ECD_00068
(yabJ)
,
ECD_00069
(thiP)
,
ECD_00070
(tbpA)
View Structure
2
800905-801049
(+)
MOCO
802047-802560 (+)
moaB
ECD_00749
Operon
DOOR ID:
590397
ECD_00748
(moaA)
,
ECD_00749
(moaB)
,
ECD_00750
(moaC)
,
ECD_00751
(moaD)
,
ECD_00752
(moaE)
View Structure
3
1851183-1851284
(+)
yybP-ykoY
1851414-1851981 (+)
yebN
ECD_01791
Single gene
DOOR ID:
2633554
ECD_01791
(yebN)
View Structure
4
2083131-2083227
(-)
TPP
2082307-2083096 (-)
thiM
ECD_02032
Operon
DOOR ID:
590627
ECD_02029
(yegW)
,
ECD_02030
(yegX)
,
ECD_02031
(thiD)
,
ECD_02032
(thiM)
View Structure
5
3052007-3052155
(-)
FMN
3051249-3051903 (-)
ribB
ECD_02913
Single gene
DOOR ID:
2633888
ECD_02913
(ribB)
View Structure
6
4104231-4104331
(-)
TPP
4102254-4104150 (-)
thiC
ECD_03871
Operon
DOOR ID:
591011
ECD_03866
(thiH)
,
ECD_03867
(thiG)
,
ECD_03868
(thiS)
,
ECD_03869
(thiF)
,
ECD_03870
(thiE)
,
ECD_03871
(thiC)
View Structure
7
4140696-4140892
(-)
lysine
4139254-4140604 (-)
lysC
ECD_03896
Single gene
DOOR ID:
2634231
ECD_03896
(lysC)
View Structure
8
4283887-4283933
(+)
mini-ykkC
4283950-4284268 (+)
sugE
ECD_04020
Single gene
DOOR ID:
2634287
ECD_04020
(sugE)
View Structure
9
4379058-4379173
(+)
Mg sensor
4379266-4381963 (+)
mgtA
ECD_04110
Single gene
DOOR ID:
2634327
ECD_04110
(mgtA)
View Structure
Genome:
Escherichia coli BL21(DE3)
(
NC_012971.2
);
Phylum:
Gammaproteobacteria
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