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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
8565-8629
(-)
fluoride
8106-8490 (-)
Msip34_0007
Putative fluoride ion transporter CrcB
Msip34_0007
Operon
DOOR ID:
1309324
Msip34_0007,
Msip34_0006,
Msip34_0005
View Structure
2
111009-111093
(+)
c-di-GMP-I
111193-112441 (+)
Msip34_0093
Uncharacterized protein
Msip34_0093
single gene
DOOR ID:
2631936
Msip34_0093
View Structure
3
182302-182509
(-)
cobalamin
180320-182195 (-)
Msip34_0154
TonB-dependent receptor
Msip34_0154
Single gene
DOOR ID:
2631952
Msip34_0154
View Structure
4
185436-185652
(-)
cobalamin
183369-185286 (-)
Msip34_0156
TonB-dependent receptor plug
Msip34_0156
Single gene
DOOR ID:
2631954
Msip34_0156
View Structure
5
206496-206579
(+)
SAH
206668-208078 (+)
Msip34_0178
Adenosylhomocysteinase (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase)
Msip34_0178
Single gene
DOOR ID:
2631967
Msip34_0178
View Structure
6
417440-417524
(-)
c-di-GMP-I
415755-417177 (-)
Msip34_0404
Diguanylate phosphodiesterase
Msip34_0404
single gene
DOOR ID:
2632016
Msip34_0404
View Structure
7
1002410-1002454
(+)
mini-ykkC
1002467-1006094 (+)
Msip34_0953
Msip34_0953
Single gene
DOOR ID:
2632153
Msip34_0953
View Structure
8
1156905-1157162
(+)
cobalamin
1157305-1160119 (+)
Msip34_1087
Ribonucleoside-diphosphate reductase
Msip34_1087
Operon
DOOR ID:
1309555
Msip34_1087,
Msip34_1088
View Structure
9
1198186-1198230
(-)
mini-ykkC
1197857-1198172 (-)
Msip34_1120
Msip34_1120
Single gene
DOOR ID:
2632223
Msip34_1120
View Structure
10
2086268-2086464
(+)
cobalamin
2086579-2088676 (+)
Msip34_1963
TonB-dependent siderophore receptor
Msip34_1963
Single gene
DOOR ID:
2632498
Msip34_1963
View Structure
11
2756716-2756827
(-)
TPP
2754764-2756648 (-)
Msip34_2617
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
Msip34_2617
Single gene
DOOR ID:
2632725
Msip34_2617
View Structure
Genome:
Methylovorus glucosetrophus SIP3-4
(
NC_012969.1
);
Phylum:
Betaproteobacteria
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S-adenosylhomocysteine catabolic process [GO:0019510]";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_012969.1";i:2;s:35:"Methylovorus glucosetrophus SIP3-4 ";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:13:"417440-417524";i:6;s:1:"-";i:7;s:10:"c-di-GMP-I";i:8;s:0:"";i:9;s:13:"415755-417177";i:10;s:1:"-";i:11;s:11:"Msip34_0404";i:12;s:29:"Diguanylate phosphodiesterase";i:13;s:11:"Msip34_0404";i:14;s:11:"single gene";i:15;s:7:"2632016";i:16;s:11:"Msip34_0404";i:17;s:0:"";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_012969.1";i:2;s:35:"Methylovorus glucosetrophus SIP3-4 ";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"1002410-1002454";i:6;s:1:"+";i:7;s:9:"mini-ykkC";i:8;s:0:"";i:9;s:15:"1002467-1006094";i:10;s:1:"+";i:11;s:11:"Msip34_0953";i:12;s:0:"";i:13;s:11:"Msip34_0953";i:14;s:11:"Single gene";i:15;s:7:"2632153";i:16;s:11:"Msip34_0953";i:17;s:0:"";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_012969.1";i:2;s:35:"Methylovorus glucosetrophus SIP3-4 ";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"1156905-1157162";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"1157305-1160119";i:10;s:1:"+";i:11;s:11:"Msip34_1087";i:12;s:37:"Ribonucleoside-diphosphate reductase ";i:13;s:11:"Msip34_1087";i:14;s:6:"Operon";i:15;s:7:"1309555";i:16;s:23:"Msip34_1087;Msip34_1088";i:17;s:28:"DNA replication [GO:0006260]";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_012969.1";i:2;s:35:"Methylovorus glucosetrophus SIP3-4 ";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"1198186-1198230";i:6;s:1:"-";i:7;s:9:"mini-ykkC";i:8;s:0:"";i:9;s:15:"1197857-1198172";i:10;s:1:"-";i:11;s:11:"Msip34_1120";i:12;s:0:"";i:13;s:11:"Msip34_1120";i:14;s:11:"Single gene";i:15;s:7:"2632223";i:16;s:11:"Msip34_1120";i:17;s:0:"";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_012969.1";i:2;s:35:"Methylovorus glucosetrophus SIP3-4 ";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"2086268-2086464";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"2086579-2088676";i:10;s:1:"+";i:11;s:11:"Msip34_1963";i:12;s:35:"TonB-dependent siderophore receptor";i:13;s:11:"Msip34_1963";i:14;s:11:"Single gene";i:15;s:7:"2632498";i:16;s:11:"Msip34_1963";i:17;s:34:"siderophore transport [GO:0015891]";i:18;s:15:"View Structure ";}i:11;a:19:{i:0;i:11;i:1;s:11:"NC_012969.1";i:2;s:35:"Methylovorus glucosetrophus SIP3-4 ";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"2756716-2756827";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"2754764-2756648";i:10;s:1:"-";i:11;s:11:"Msip34_2617";i:12;s:176:"Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)";i:13;s:11:"Msip34_2617";i:14;s:11:"Single gene";i:15;s:7:"2632725";i:16;s:11:"Msip34_2617";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}}
