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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
78315-78414
(-)
TPP
77300-78284 (-)
tbpA
ECB_00070
Operon
DOOR ID:
1183273
ECB_00070
(tbpA)
,
ECB_00069
(thiP)
,
ECB_00068
(thiQ)
View Structure
2
809538-809682
(+)
MOCO
810680-811193 (+)
moaB
ECB_00749
Operon
DOOR ID:
1183423
ECB_00748
(moaA)
,
ECB_00749
(moaB)
,
ECB_00750
(moaC)
,
ECB_00751
(moaD)
,
ECB_00752
(moaE)
View Structure
3
1884035-1884136
(+)
yybP-ykoY
1884266-1884833 (+)
yebN
ECB_01791
Single gene
DOOR ID:
2630195
ECB_01791
(yebN)
View Structure
4
2139465-2139561
(-)
TPP
2138641-2139430 (-)
thiM
ECB_02032
Operon
DOOR ID:
1183668
ECB_02029
(yegW)
,
ECB_02030
(yegX)
,
ECB_02031
(thiD)
,
ECB_02032
(thiM)
View Structure
5
3118742-3118890
(-)
FMN
3117984-3118638 (-)
ribB
ECB_02913
Single gene
DOOR ID:
2630541
ECB_02913
(ribB)
View Structure
6
4143245-4143435
(+)
cobalamin
4143499-4145344 (+)
btuB
ECB_03851
Operon
DOOR ID:
1184048
ECB_03851
(btuB)
,
ECB_03852
(murI)
View Structure
7
4175791-4175891
(-)
TPP
4173814-4175710 (-)
thiC
ECB_03871
Operon
DOOR ID:
1184053
ECB_03866
(thiH)
,
ECB_03867
(thiG)
,
ECB_03868
(thiS)
,
ECB_03869
(thiF)
,
ECB_03870
(thiE)
,
ECB_03871
(thiC)
View Structure
8
4212256-4212452
(-)
lysine
4210814-4212164 (-)
lysC
ECB_03896
Single gene
DOOR ID:
2630883
ECB_03896
(lysC)
View Structure
9
4355522-4355568
(+)
mini-ykkC
4355585-4355903 (+)
sugE
ECB_04020
Single gene
DOOR ID:
2630938
ECB_04020
(sugE)
View Structure
10
4450693-4450808
(+)
Mg sensor
4450901-4453598 (+)
mgtA
ECB_04110
Single gene
DOOR ID:
2630976
ECB_04110
(mgtA)
View Structure
Genome:
Escherichia coli B str. REL606
(
NC_012967.1
);
Phylum:
Gammaproteobacteria
a:11:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_012967.1";i:2;s:31:"Escherichia coli B str. REL606 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:11:"78315-78414";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:11:"77300-78284";i:10;s:1:"-";i:11;s:4:"tbpA";i:12;s:0:"";i:13;s:9:"ECB_00070";i:14;s:6:"Operon";i:15;s:7:"1183273";i:16;s:47:"ECB_00070(tbpA);ECB_00069(thiP);ECB_00068(thiQ)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_012967.1";i:2;s:31:"Escherichia coli B str. REL606 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:13:"809538-809682";i:6;s:1:"+";i:7;s:4:"MOCO";i:8;s:0:"";i:9;s:13:"810680-811193";i:10;s:1:"+";i:11;s:4:"moaB";i:12;s:0:"";i:13;s:9:"ECB_00749";i:14;s:6:"Operon";i:15;s:7:"1183423";i:16;s:79:"ECB_00748(moaA);ECB_00749(moaB);ECB_00750(moaC);ECB_00751(moaD);ECB_00752(moaE)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_012967.1";i:2;s:31:"Escherichia coli B str. REL606 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"1884035-1884136";i:6;s:1:"+";i:7;s:9:"yybP-ykoY";i:8;s:0:"";i:9;s:15:"1884266-1884833";i:10;s:1:"+";i:11;s:4:"yebN";i:12;s:0:"";i:13;s:9:"ECB_01791";i:14;s:11:"Single gene";i:15;s:7:"2630195";i:16;s:15:"ECB_01791(yebN)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_012967.1";i:2;s:31:"Escherichia coli B str. REL606 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"2139465-2139561";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"2138641-2139430";i:10;s:1:"-";i:11;s:4:"thiM";i:12;s:0:"";i:13;s:9:"ECB_02032";i:14;s:6:"Operon";i:15;s:7:"1183668";i:16;s:63:"ECB_02029(yegW);ECB_02030(yegX);ECB_02031(thiD);ECB_02032(thiM)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_012967.1";i:2;s:31:"Escherichia coli B str. REL606 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"3118742-3118890";i:6;s:1:"-";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"3117984-3118638";i:10;s:1:"-";i:11;s:4:"ribB";i:12;s:0:"";i:13;s:9:"ECB_02913";i:14;s:11:"Single gene";i:15;s:7:"2630541";i:16;s:15:"ECB_02913(ribB)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_012967.1";i:2;s:31:"Escherichia coli B str. REL606 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"4143245-4143435";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"4143499-4145344";i:10;s:1:"+";i:11;s:4:"btuB";i:12;s:0:"";i:13;s:9:"ECB_03851";i:14;s:6:"Operon";i:15;s:7:"1184048";i:16;s:31:"ECB_03851(btuB);ECB_03852(murI)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_012967.1";i:2;s:31:"Escherichia coli B str. REL606 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"4175791-4175891";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"4173814-4175710";i:10;s:1:"-";i:11;s:4:"thiC";i:12;s:0:"";i:13;s:9:"ECB_03871";i:14;s:6:"Operon";i:15;s:7:"1184053";i:16;s:95:"ECB_03866(thiH);ECB_03867(thiG);ECB_03868(thiS);ECB_03869(thiF);ECB_03870(thiE);ECB_03871(thiC)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_012967.1";i:2;s:31:"Escherichia coli B str. REL606 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"4212256-4212452";i:6;s:1:"-";i:7;s:6:"lysine";i:8;s:0:"";i:9;s:15:"4210814-4212164";i:10;s:1:"-";i:11;s:4:"lysC";i:12;s:0:"";i:13;s:9:"ECB_03896";i:14;s:11:"Single gene";i:15;s:7:"2630883";i:16;s:15:"ECB_03896(lysC)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_012967.1";i:2;s:31:"Escherichia coli B str. REL606 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"4355522-4355568";i:6;s:1:"+";i:7;s:9:"mini-ykkC";i:8;s:0:"";i:9;s:15:"4355585-4355903";i:10;s:1:"+";i:11;s:4:"sugE";i:12;s:0:"";i:13;s:9:"ECB_04020";i:14;s:11:"Single gene";i:15;s:7:"2630938";i:16;s:15:"ECB_04020(sugE)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_012967.1";i:2;s:31:"Escherichia coli B str. REL606 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"4450693-4450808";i:6;s:1:"+";i:7;s:9:"Mg sensor";i:8;s:0:"";i:9;s:15:"4450901-4453598";i:10;s:1:"+";i:11;s:4:"mgtA";i:12;s:0:"";i:13;s:9:"ECB_04110";i:14;s:11:"Single gene";i:15;s:7:"2630976";i:16;s:15:"ECB_04110(mgtA)";i:17;s:0:"";i:18;s:15:"View Structure ";}}