Genome: Paenibacillus sp. JDR-2 (NC_012914.1); Phylum: Firmicutes
S.No.Riboswitch Location and StrandRiboswitch classDownstream gene location and StrandDownstream gene name/gene product descriptionLocus_tag of downstream geneSingle gene/within operon (According to DOOR database)Operon details (List of genes within operon and their Locus_tag)Predicted Structure
1 27565-27774 (+)ydaO-yuaA28018-29152 (+)Pjdr2_0024

3D domain protein		Pjdr2_0024Single gene

DOOR ID: 2616841		Pjdr2_0024 View Structure
2 125573-125729 (-)ydaO-yuaA125099-125567 (-)Pjdr2_0116

NLP/P60 protein		Pjdr2_0116Single gene

DOOR ID: 2616877		Pjdr2_0116 View Structure
3 378322-378509 (+)ydaO-yuaA378662-380489 (+)Pjdr2_0318

Pjdr2_0318Single gene

DOOR ID: 2616978		Pjdr2_0318 View Structure
4 402536-402634 (+)purine402756-404055 (+)Pjdr2_0338

Xanthine/uracil/vitamin C permease		Pjdr2_0338Single gene

DOOR ID: 2616987		Pjdr2_0338 View Structure
5 740753-740832 (+)ZMP-ZTP740882-741482 (+)Pjdr2_0637

ThiJ/PfpI domain protein		Pjdr2_0637Operon

DOOR ID: 582807		Pjdr2_0637,
Pjdr2_0638		 View Structure
6 850879-850982 (-)TPP848812-850576 (-)Pjdr2_0731

Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)		Pjdr2_0731Single gene

DOOR ID: 2617159		Pjdr2_0731 View Structure
7 1008021-1008121 (+)purine1008274-1009660 (+)Pjdr2_0851

Xanthine/uracil/vitamin C permease		Pjdr2_0851Single gene

DOOR ID: 2617212		Pjdr2_0851 View Structure
8 1018121-1018221 (+)purine1018409-1018895 (+)Pjdr2_0860

N5-carboxyaminoimidazole ribonucleotide mutase (N5-CAIR mutase) (8) (5-(carboxyamino)imidazole ribonucleotide mutase)		Pjdr2_0860Operon

DOOR ID: 582861		Pjdr2_0860,
Pjdr2_0861,
Pjdr2_0862,
Pjdr2_0863		 View Structure
9 1069794-1069878 (-)ZMP-ZTP1068855-1069710 (-)Pjdr2_0898

Bifunctional protein FolD [Includes: Methenyltetrahydrofolate cyclohydrolase ]		Pjdr2_0898Operon

DOOR ID: 582869		Pjdr2_0897,
Pjdr2_0898		 View Structure
10 1265169-1265272 (+)purine1265412-1266015 (+)Pjdr2_1053

Xanthine phosphoribosyltransferase (XPRTase) (2)		Pjdr2_1053Operon

DOOR ID: 582899		Pjdr2_1053,
Pjdr2_1054		 View Structure
11 2219693-2219790 (-)purine2217824-2219582 (-)Pjdr2_1876

Adenine deaminase (Adenase) (Adenine aminase) 		Pjdr2_1876Single gene

DOOR ID: 2617638		Pjdr2_1876 View Structure
12 2388946-2389108 (+)FMN2389290-2390223 (+)Pjdr2_2015

Pjdr2_2015Single gene

DOOR ID: 2617705		Pjdr2_2015 View Structure
13 2725861-2726068 (+)FMN2726314-2727421 (+)Pjdr2_2349

Riboflavin biosynthesis protein RibD [Includes: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (DRAP deaminase) (93) (HTP reductase)]		Pjdr2_2349Operon

DOOR ID: 583156		Pjdr2_2349,
Pjdr2_2350,
Pjdr2_2351,
Pjdr2_2352,
Pjdr2_2353,
Pjdr2_2354		 View Structure
14 3103099-3103278 (+)cobalamin3103436-3107990 (+)Pjdr2_2684

S-layer domain protein		Pjdr2_2684Single gene

DOOR ID: 2617946		Pjdr2_2684 View Structure
15 3231627-3231732 (+)ykkC-yxkD3231849-3233202 (+)Pjdr2_2802

Amino acid permease-associated region		Pjdr2_2802Single gene

DOOR ID: 2617994		Pjdr2_2802 View Structure
16 3233301-3233422 (+)ykkC-yxkD3233462-3234185 (+)Pjdr2_2803

Urea carboxylase-associated protein 2		Pjdr2_2803Operon

DOOR ID: 583250		Pjdr2_2803,
Pjdr2_2804,
Pjdr2_2805,
Pjdr2_2806		 View Structure
17 3348786-3348977 (+)lysine3349103-3350540 (+)Pjdr2_2916

Amino acid permease-associated region		Pjdr2_2916Single gene

DOOR ID: 2618045		Pjdr2_2916 View Structure
18 3833560-3833775 (-)cobalamin3832399-3833419 (-)Pjdr2_3355

Periplasmic binding protein		Pjdr2_3355Operon

DOOR ID: 583361		Pjdr2_3347,
Pjdr2_3348,
Pjdr2_3349,
Pjdr2_3350,
Pjdr2_3351,
Pjdr2_3352,
Pjdr2_3353,
Pjdr2_3354,
Pjdr2_3355		 View Structure
19 3983609-3983721 (-)TPP3982424-3983459 (-)Pjdr2_3510

NMT1/THI5 like domain protein		Pjdr2_3510Operon

DOOR ID: 583392		Pjdr2_3506,
Pjdr2_3507,
Pjdr2_3508,
Pjdr2_3509,
Pjdr2_3510		 View Structure
20 4006535-4006595 (+)fluoride4006672-4007995 (+)Pjdr2_3532

Chloride channel core		Pjdr2_3532Single gene

DOOR ID: 2618250		Pjdr2_3532 View Structure
21 4481246-4481333 (-)c-di-GMP-I4479374-4481153 (-)Pjdr2_3934

Methyl-accepting chemotaxis sensory transducer		Pjdr2_3934single gene

DOOR ID: 2618415		Pjdr2_3934 View Structure
22 4511753-4511859 (+)ykkC-yxkD4511939-4512938 (+)Pjdr2_3966

ABC transporter related		Pjdr2_3966Operon

DOOR ID: 583482		Pjdr2_3966,
Pjdr2_3967,
Pjdr2_3968		 View Structure
23 4968982-4969025 (-)PreQ14968223-4968889 (-)Pjdr2_4316

7-cyano-7-deazaguanine synthase (0) (7-cyano-7-carbaguanine synthase) (PreQ(0) synthase) (Queuosine biosynthesis protein QueC)		Pjdr2_4316Operon

DOOR ID: 583553		Pjdr2_4313,
Pjdr2_4314,
Pjdr2_4315,
Pjdr2_4316		 View Structure
24 5519455-5519557 (-)SAM5518433-5519351 (-)Pjdr2_4799

Homoserine O-acetyltransferase (HAT) (1) (Homoserine transacetylase) (HTA)		Pjdr2_4799Operon

DOOR ID: 583642		Pjdr2_4797,
Pjdr2_4798,
Pjdr2_4799		 View Structure
25 5534576-5534737 (-)ydaO-yuaA5533164-5534505 (-)Pjdr2_4814

Potassium uptake protein; TrkH family (4)		Pjdr2_4814Operon

DOOR ID: 583645		Pjdr2_4813,
Pjdr2_4814		 View Structure
26 5627248-5627325 (-)ZMP-ZTP5626477-5627197 (-)Pjdr2_4907

Pjdr2_4907Single gene

DOOR ID: 2618838		Pjdr2_4907 View Structure
27 6191903-6192041 (-)ydaO-yuaA6190708-6191719 (-)Pjdr2_5396

Pjdr2_5396Single gene

DOOR ID: 2619068		Pjdr2_5396 View Structure
28 6200962-6201071 (-)TPP6200176-6200869 (-)Pjdr2_5407

Aminopyrimidine aminohydrolase 		Pjdr2_5407Operon

DOOR ID: 583754		Pjdr2_5405,
Pjdr2_5406,
Pjdr2_5407		 View Structure
29 6457901-6458106 (-)glmS6455898-6457731 (-)Pjdr2_5628

Glutamine--fructose-6-phosphate aminotransferase [isomerizing] (6) (D-fructose-6-phosphate amidotransferase) (GFAT) (Glucosamine-6-phosphate synthase) (Hexosephosphate aminotransferase) (L-glutamine--D-fructose-6-phosphate amidotransferase)		Pjdr2_5628Single gene

DOOR ID: 2619144		Pjdr2_5628 View Structure
30 6695489-6695569 (-)ZMP-ZTP6694929-6695388 (-)Pjdr2_5836

Sugar-phosphate isomerase; RpiB/LacA/LacB family 		Pjdr2_5836Single gene

DOOR ID: 2619215		Pjdr2_5836 View Structure
31 6722511-6722613 (+)ykkC-yxkD6722691-6723048 (+)Pjdr2_5861

Small multidrug resistance protein		Pjdr2_5861Operon

DOOR ID: 583849		Pjdr2_5861,
Pjdr2_5862		 View Structure
32 6859858-6860052 (+)ydaO-yuaA6860470-6860890 (+)Pjdr2_5988

Pjdr2_5988Single gene

DOOR ID: 2619297		Pjdr2_5988 View Structure
33 6860164-6860349 (+)ydaO-yuaA6860470-6860890 (+)Pjdr2_5988

Pjdr2_5988Single gene

DOOR ID: 2619297		Pjdr2_5988 View Structure