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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
78316-78415
(-)
TPP
77301-78285 (-)
tbpA
B21_00069
Operon
DOOR ID:
580548
B21_00067
(thiQ)
,
B21_00068
(thiP)
,
B21_00069
(tbpA)
,
B21_00070
(sgrR)
View Structure
2
800899-801043
(+)
MOCO
802041-802554 (+)
moaB
B21_00766
Operon
DOOR ID:
580692
B21_00765
(moaA)
,
B21_00766
(moaB)
,
B21_00767
(moaC)
,
B21_00768
(moaD)
,
B21_00769
(moaE)
,
B21_00770
(ybhL)
View Structure
3
1851177-1851278
(+)
yybP-ykoY
1851408-1851975 (+)
yebN
B21_01779
Single gene
DOOR ID:
2613606
B21_01779
(yebN)
View Structure
4
2083125-2083221
(-)
TPP
2082301-2083090 (-)
thiM
B21_01996
Operon
DOOR ID:
580957
B21_01993
(yegW)
,
B21_01994
(yegX)
,
B21_01995
(thiD)
,
B21_01996
(thiM)
View Structure
5
3052001-3052149
(-)
FMN
3051243-3051897 (-)
ribB
B21_02863
Single gene
DOOR ID:
2613783
B21_02863
(ribB)
View Structure
6
4104225-4104325
(-)
TPP
4102248-4104144 (-)
thiC
B21_03824
Operon
DOOR ID:
581356
B21_03819
(thiH)
,
B21_03820
(thiG)
,
B21_03821
(thiS)
,
B21_03822
(thiF)
,
B21_03823
(thiE)
,
B21_03824
(thiC)
View Structure
7
4140690-4140886
(-)
lysine
4139248-4140598 (-)
lysC
B21_03856
Single gene
DOOR ID:
2613980
B21_03856
(lysC)
View Structure
8
4283881-4283927
(+)
mini-ykkC
4283944-4284262 (+)
sugE
B21_03982
Operon
DOOR ID:
581388
B21_03979
(efp)
,
B21_03980
(ecnA)
,
B21_03981
(ecnB)
,
B21_03982
(sugE)
View Structure
9
4379052-4379167
(+)
Mg sensor
4379260-4381957 (+)
mgtA
B21_04074
Single gene
DOOR ID:
2614028
B21_04074
(mgtA)
View Structure
Genome:
Escherichia coli BL21(DE3)
(
NC_012892.2
);
Phylum:
Gammaproteobacteria
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