About
Search
Advanced Search
Genomes
Predict
About us
S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
201853-201897
(-)
PreQ1
200690-201671 (-)
SDEG_0227
Inosine-uridine preferring nucleoside hydrolase
SDEG_0227
Operon
DOOR ID:
580121
SDEG_0224,
SDEG_0225,
SDEG_0226,
SDEG_0227
View Structure
2
396337-396461
(+)
FMN
396539-397103 (+)
SDEG_0423
Riboflavin transporter
SDEG_0423
Operon
DOOR ID:
580161
SDEG_0423,
SDEG_0424
View Structure
3
583959-584055
(-)
TPP
583347-583944 (-)
SDEG_0615
SDEG_0615
Single gene
DOOR ID:
2612715
SDEG_0615
View Structure
4
687476-687595
(+)
preQ1-II
688242-690201 (+)
ligA
DNA ligase (Polydeoxyribonucleotide synthase [NAD(+)])
SDEG_0716
Operon
DOOR ID:
580229
SDEG_0716
(ligA)
,
SDEG_0717,
SDEG_0718
(pulA)
View Structure
5
882621-882716
(+)
purine
882802-883384 (+)
xpt
Xanthine phosphoribosyltransferase (XPRTase) (2)
SDEG_0895
Operon
DOOR ID:
580269
SDEG_0895
(xpt)
,
SDEG_0896
View Structure
6
1062473-1062554
(+)
glycine
1062761-1064099 (+)
SDEG_1084
Putative amino acid symporter
SDEG_1084
Single gene
DOOR ID:
2612876
SDEG_1084
View Structure
7
1062555-1062641
(+)
glycine
1062761-1064099 (+)
SDEG_1084
Putative amino acid symporter
SDEG_1084
Single gene
DOOR ID:
2612876
SDEG_1084
View Structure
Genome:
Streptococcus dysgalactiae subsp. equisimilis GGS 124
(
NC_012891.1
);
Phylum:
Firmicutes
a:8:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_012891.1";i:2;s:54:"Streptococcus dysgalactiae subsp. equisimilis GGS 124 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"201853-201897";i:6;s:1:"-";i:7;s:5:"PreQ1";i:8;s:0:"";i:9;s:13:"200690-201671";i:10;s:1:"-";i:11;s:9:"SDEG_0227";i:12;s:48:"Inosine-uridine preferring nucleoside hydrolase ";i:13;s:9:"SDEG_0227";i:14;s:6:"Operon";i:15;s:6:"580121";i:16;s:39:"SDEG_0224;SDEG_0225;SDEG_0226;SDEG_0227";i:17;s:30:"metabolic process [GO:0008152]";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_012891.1";i:2;s:54:"Streptococcus dysgalactiae subsp. equisimilis GGS 124 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"396337-396461";i:6;s:1:"+";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:13:"396539-397103";i:10;s:1:"+";i:11;s:9:"SDEG_0423";i:12;s:22:"Riboflavin transporter";i:13;s:9:"SDEG_0423";i:14;s:6:"Operon";i:15;s:6:"580161";i:16;s:19:"SDEG_0423;SDEG_0424";i:17;s:0:"";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_012891.1";i:2;s:54:"Streptococcus dysgalactiae subsp. equisimilis GGS 124 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"583959-584055";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:13:"583347-583944";i:10;s:1:"-";i:11;s:9:"SDEG_0615";i:12;s:0:"";i:13;s:9:"SDEG_0615";i:14;s:11:"Single gene";i:15;s:7:"2612715";i:16;s:9:"SDEG_0615";i:17;s:0:"";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_012891.1";i:2;s:54:"Streptococcus dysgalactiae subsp. equisimilis GGS 124 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"687476-687595";i:6;s:1:"+";i:7;s:8:"preQ1-II";i:8;s:0:"";i:9;s:13:"688242-690201";i:10;s:1:"+";i:11;s:4:"ligA";i:12;s:55:"DNA ligase (Polydeoxyribonucleotide synthase [NAD(+)])";i:13;s:9:"SDEG_0716";i:14;s:6:"Operon";i:15;s:6:"580229";i:16;s:41:"SDEG_0716(ligA);SDEG_0717;SDEG_0718(pulA)";i:17;s:53:"DNA repair [GO:0006281]; DNA replication [GO:0006260]";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_012891.1";i:2;s:54:"Streptococcus dysgalactiae subsp. equisimilis GGS 124 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"882621-882716";i:6;s:1:"+";i:7;s:6:"purine";i:8;s:0:"";i:9;s:13:"882802-883384";i:10;s:1:"+";i:11;s:3:"xpt";i:12;s:48:"Xanthine phosphoribosyltransferase (XPRTase) (2)";i:13;s:9:"SDEG_0895";i:14;s:6:"Operon";i:15;s:6:"580269";i:16;s:24:"SDEG_0895(xpt);SDEG_0896";i:17;s:109:"purine ribonucleoside salvage [GO:0006166]; xanthine metabolic process [GO:0046110]; XMP salvage [GO:0032265]";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_012891.1";i:2;s:54:"Streptococcus dysgalactiae subsp. equisimilis GGS 124 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1062473-1062554";i:6;s:1:"+";i:7;s:7:"glycine";i:8;s:6:"Tandem";i:9;s:15:"1062761-1064099";i:10;s:1:"+";i:11;s:9:"SDEG_1084";i:12;s:29:"Putative amino acid symporter";i:13;s:9:"SDEG_1084";i:14;s:11:"Single gene";i:15;s:7:"2612876";i:16;s:9:"SDEG_1084";i:17;s:0:"";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_012891.1";i:2;s:54:"Streptococcus dysgalactiae subsp. equisimilis GGS 124 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1062555-1062641";i:6;s:1:"+";i:7;s:7:"glycine";i:8;s:6:"Tandem";i:9;s:15:"1062761-1064099";i:10;s:1:"+";i:11;s:9:"SDEG_1084";i:12;s:29:"Putative amino acid symporter";i:13;s:9:"SDEG_1084";i:14;s:11:"Single gene";i:15;s:7:"2612876";i:16;s:9:"SDEG_1084";i:17;s:0:"";i:18;s:15:"View Structure ";}}
