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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
905863-906057
(+)
cobalamin
906128-908402 (+)
Desal_0813
5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (4) (Cobalamin-independent methionine synthase) (Methionine synthase; vitamin-B12 independent isozyme)
Desal_0813
Operon
DOOR ID:
579005
Desal_0813,
Desal_0814
View Structure
2
926568-926703
(-)
cobalamin
923626-926311 (-)
Desal_0826
Vitamin B12-dependent ribonucleotide reductase
Desal_0826
Single gene
DOOR ID:
2610655
Desal_0826
View Structure
3
963659-963759
(-)
SAM
963119-963443 (-)
Desal_0862
Desal_0862
Single gene
DOOR ID:
2610665
Desal_0862
View Structure
4
1435237-1435325
(+)
ZMP-ZTP
1435378-1436635 (+)
Desal_1305
Serine hydroxymethyltransferase (SHMT) (Serine methylase)
Desal_1305
Single gene
DOOR ID:
2610831
Desal_1305
View Structure
5
2309810-2309963
(-)
FMN
2309050-2309704 (-)
Desal_2097
3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)
Desal_2097
Single gene
DOOR ID:
2611096
Desal_2097
View Structure
6
2535550-2535753
(-)
cobalamin
2534545-2535448 (-)
Desal_2307
Sirohydrochlorin cobaltochelatase
Desal_2307
Operon
DOOR ID:
579309
Desal_2303,
Desal_2304,
Desal_2305,
Desal_2306,
Desal_2307
View Structure
7
2899058-2899160
(+)
TPP
2899218-2899419 (+)
Desal_2647
Thiamine biosynthesis protein ThiS
Desal_2647
Operon
DOOR ID:
579387
Desal_2647,
Desal_2648,
Desal_2649
(thiH)
,
Desal_2650,
Desal_2651
View Structure
8
3932683-3932827
(-)
cobalamin
3930347-3932408 (-)
Desal_3514
Anaerobic ribonucleoside-triphosphate reductase
Desal_3514
Single gene
DOOR ID:
2611684
Desal_3514
View Structure
Genome:
Desulfovibrio salexigens DSM 2638
(
NC_012881.1
);
Phylum:
delta/epsilon subdivisions
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