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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
756165-756294
(-)
ZMP-ZTP
754782-756093 (-)
glyA
Serine hydroxymethyltransferase (SHMT) (Serine methylase)
Rpic12D_0722
Single gene
DOOR ID:
2606988
Rpic12D_0722
(glyA)
View Structure
2
2046831-2047009
(+)
yybP-ykoY
2047063-2047636 (+)
Rpic12D_1927
Rpic12D_1927
Single gene
DOOR ID:
2607393
Rpic12D_1927
View Structure
3
2356703-2356951
(-)
cobalamin
2354688-2356563 (-)
Rpic12D_2209
TonB-dependent receptor
Rpic12D_2209
Operon
DOOR ID:
577509
Rpic12D_2203,
Rpic12D_2204
(cobS)
,
Rpic12D_2205
(cobT)
,
Rpic12D_2206,
Rpic12D_2207,
Rpic12D_2208,
Rpic12D_2209
View Structure
4
2671905-2672117
(+)
yybP-ykoY
2673304-2674252 (-)
Rpic12D_2542
Transcriptional regulator; LysR family
Rpic12D_2542
Single gene
DOOR ID:
2607617
Rpic12D_2542
View Structure
5
3268185-3268281
(-)
glycine
3267519-3267846 (-)
Rpic12D_3094
Ethyl tert-butyl ether degradation EthD
Rpic12D_3094
Operon
DOOR ID:
577670
Rpic12D_3094,
Rpic12D_3095,
Rpic12D_3096
View Structure
6
3331779-3331876
(+)
glycine
3332145-3333273 (+)
gcvT
Aminomethyltransferase (0) (Glycine cleavage system T protein)
Rpic12D_3160
Operon
DOOR ID:
577683
Rpic12D_3160
(gcvT)
,
Rpic12D_3161,
Rpic12D_3162
View Structure
7
3331889-3332016
(+)
glycine
3332145-3333273 (+)
gcvT
Aminomethyltransferase (0) (Glycine cleavage system T protein)
Rpic12D_3160
Operon
DOOR ID:
577683
Rpic12D_3160
(gcvT)
,
Rpic12D_3161,
Rpic12D_3162
View Structure
8
3497607-3497708
(+)
TPP
3497807-3499715 (+)
Rpic12D_3318
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
Rpic12D_3318
Operon
DOOR ID:
577713
Rpic12D_3318,
Rpic12D_3319,
Rpic12D_3320,
Rpic12D_3321
(thiG)
,
Rpic12D_3322
View Structure
9
3516098-3516182
(+)
SAH
3516290-3517715 (+)
Rpic12D_3333
Adenosylhomocysteinase (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase)
Rpic12D_3333
Operon
DOOR ID:
577717
Rpic12D_3333,
Rpic12D_3334,
Rpic12D_3335,
Rpic12D_3336
View Structure
Genome:
Ralstonia pickettii 12D chromosome I
(
NC_012856.1
);
Phylum:
Betaproteobacteria
a:10:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_012856.1";i:2;s:36:"Ralstonia pickettii 12D chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:13:"756165-756294";i:6;s:1:"-";i:7;s:7:"ZMP-ZTP";i:8;s:0:"";i:9;s:13:"754782-756093";i:10;s:1:"-";i:11;s:4:"glyA";i:12;s:58:"Serine hydroxymethyltransferase (SHMT) (Serine methylase) ";i:13;s:12:"Rpic12D_0722";i:14;s:11:"Single gene";i:15;s:7:"2606988";i:16;s:18:"Rpic12D_0722(glyA)";i:17;s:100:"glycine biosynthetic process from serine [GO:0019264]; tetrahydrofolate interconversion [GO:0035999]";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_012856.1";i:2;s:36:"Ralstonia pickettii 12D chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"2046831-2047009";i:6;s:1:"+";i:7;s:9:"yybP-ykoY";i:8;s:0:"";i:9;s:15:"2047063-2047636";i:10;s:1:"+";i:11;s:12:"Rpic12D_1927";i:12;s:0:"";i:13;s:12:"Rpic12D_1927";i:14;s:11:"Single gene";i:15;s:7:"2607393";i:16;s:12:"Rpic12D_1927";i:17;s:0:"";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_012856.1";i:2;s:36:"Ralstonia pickettii 12D chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"2356703-2356951";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"2354688-2356563";i:10;s:1:"-";i:11;s:12:"Rpic12D_2209";i:12;s:23:"TonB-dependent receptor";i:13;s:12:"Rpic12D_2209";i:14;s:6:"Operon";i:15;s:6:"577509";i:16;s:102:"Rpic12D_2203;Rpic12D_2204(cobS);Rpic12D_2205(cobT);Rpic12D_2206;Rpic12D_2207;Rpic12D_2208;Rpic12D_2209";i:17;s:0:"";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_012856.1";i:2;s:36:"Ralstonia pickettii 12D chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"2671905-2672117";i:6;s:1:"+";i:7;s:9:"yybP-ykoY";i:8;s:0:"";i:9;s:15:"2673304-2674252";i:10;s:1:"-";i:11;s:12:"Rpic12D_2542";i:12;s:38:"Transcriptional regulator; LysR family";i:13;s:12:"Rpic12D_2542";i:14;s:11:"Single gene";i:15;s:7:"2607617";i:16;s:12:"Rpic12D_2542";i:17;s:41:"transcription; DNA-templated [GO:0006351]";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_012856.1";i:2;s:36:"Ralstonia pickettii 12D chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"3268185-3268281";i:6;s:1:"-";i:7;s:7:"glycine";i:8;s:0:"";i:9;s:15:"3267519-3267846";i:10;s:1:"-";i:11;s:12:"Rpic12D_3094";i:12;s:39:"Ethyl tert-butyl ether degradation EthD";i:13;s:12:"Rpic12D_3094";i:14;s:6:"Operon";i:15;s:6:"577670";i:16;s:38:"Rpic12D_3094;Rpic12D_3095;Rpic12D_3096";i:17;s:0:"";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_012856.1";i:2;s:36:"Ralstonia pickettii 12D chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"3331779-3331876";i:6;s:1:"+";i:7;s:7:"glycine";i:8;s:6:"Tandem";i:9;s:15:"3332145-3333273";i:10;s:1:"+";i:11;s:4:"gcvT";i:12;s:62:"Aminomethyltransferase (0) (Glycine cleavage system T protein)";i:13;s:12:"Rpic12D_3160";i:14;s:6:"Operon";i:15;s:6:"577683";i:16;s:44:"Rpic12D_3160(gcvT);Rpic12D_3161;Rpic12D_3162";i:17;s:64:"glycine decarboxylation via glycine cleavage system [GO:0019464]";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_012856.1";i:2;s:36:"Ralstonia pickettii 12D chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"3331889-3332016";i:6;s:1:"+";i:7;s:7:"glycine";i:8;s:6:"Tandem";i:9;s:15:"3332145-3333273";i:10;s:1:"+";i:11;s:4:"gcvT";i:12;s:62:"Aminomethyltransferase (0) (Glycine cleavage system T protein)";i:13;s:12:"Rpic12D_3160";i:14;s:6:"Operon";i:15;s:6:"577683";i:16;s:44:"Rpic12D_3160(gcvT);Rpic12D_3161;Rpic12D_3162";i:17;s:64:"glycine decarboxylation via glycine cleavage system [GO:0019464]";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_012856.1";i:2;s:36:"Ralstonia pickettii 12D chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"3497607-3497708";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"3497807-3499715";i:10;s:1:"+";i:11;s:12:"Rpic12D_3318";i:12;s:176:"Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)";i:13;s:12:"Rpic12D_3318";i:14;s:6:"Operon";i:15;s:6:"577713";i:16;s:70:"Rpic12D_3318;Rpic12D_3319;Rpic12D_3320;Rpic12D_3321(thiG);Rpic12D_3322";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_012856.1";i:2;s:36:"Ralstonia pickettii 12D chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"3516098-3516182";i:6;s:1:"+";i:7;s:3:"SAH";i:8;s:0:"";i:9;s:15:"3516290-3517715";i:10;s:1:"+";i:11;s:12:"Rpic12D_3333";i:12;s:73:"Adenosylhomocysteinase (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase)";i:13;s:12:"Rpic12D_3333";i:14;s:6:"Operon";i:15;s:6:"577717";i:16;s:51:"Rpic12D_3333;Rpic12D_3334;Rpic12D_3335;Rpic12D_3336";i:17;s:96:"one-carbon metabolic process [GO:0006730]; S-adenosylhomocysteine catabolic process [GO:0019510]";i:18;s:15:"View Structure ";}}
