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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
190373-190451
(-)
sam-alpha
189145-190330 (-)
Rleg_0190
O-succinylhomoserine sulfhydrylase (OSH sulfhydrylase) (OSHS sulfhydrylase)
Rleg_0190
Single gene
DOOR ID:
2603910
Rleg_0190
View Structure
2
398619-398824
(-)
ydaO-yuaA
396502-397516 (+)
Rleg_0388
Binding-protein-dependent transport systems inner membrane component
Rleg_0388
Operon
DOOR ID:
576008
Rleg_0388,
Rleg_0389,
Rleg_0390,
Rleg_0391
View Structure
3
1325893-1326047
(+)
FMN
1326138-1327050 (+)
Rleg_1342
Rleg_1342
Single gene
DOOR ID:
2604515
Rleg_1342
View Structure
4
2080232-2080320
(+)
glycine
2080481-2081618 (+)
gcvT
Glycine cleavage system T protein
Rleg_2091
Operon
DOOR ID:
576293
Rleg_2091
(gcvT)
,
Rleg_2092,
Rleg_2093
View Structure
5
2080324-2080404
(+)
glycine
2080481-2081618 (+)
gcvT
Glycine cleavage system T protein
Rleg_2091
Operon
DOOR ID:
576293
Rleg_2091
(gcvT)
,
Rleg_2092,
Rleg_2093
View Structure
6
2214445-2214632
(-)
cobalamin
2213716-2214403 (-)
Rleg_2211
Cob(II)yrinic acid a;c-diamide reductase
Rleg_2211
Single gene
DOOR ID:
2604936
Rleg_2211
View Structure
7
2267297-2267447
(+)
FMN
2267573-2268209 (+)
Rleg_2262
3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)
Rleg_2262
Single gene
DOOR ID:
2604966
Rleg_2262
View Structure
8
2378648-2379045
(-)
cobalamin
2377762-2378272 (-)
cobU
Bifunctional adenosylcobalamin biosynthesis protein (2)
Rleg_2373
Operon
DOOR ID:
576343
Rleg_2370,
Rleg_2371
(cobN)
,
Rleg_2372,
Rleg_2373
(cobU)
View Structure
9
2599366-2599622
(-)
cobalamin
2598171-2599188 (-)
Rleg_2601
Periplasmic binding protein
Rleg_2601
Operon
DOOR ID:
576373
Rleg_2599,
Rleg_2600,
Rleg_2601
View Structure
10
2674475-2674617
(+)
FMN
2674695-2675130 (+)
Rleg_2686
6;7-dimethyl-8-ribityllumazine synthase (DMRL synthase) (LS) (Lumazine synthase) (8)
Rleg_2686
Single gene
DOOR ID:
2605201
Rleg_2686
View Structure
11
2764749-2764820
(-)
SAH
2763749-2764409 (-)
Rleg_2784
Nitrile hydratase subunit beta (NHase) (4)
Rleg_2784
Operon
DOOR ID:
576405
Rleg_2783,
Rleg_2784,
Rleg_2785
View Structure
12
3497924-3497999
(-)
cobalamin
3497662-3497872 (-)
Rleg_3465
Rleg_3465
Single gene
DOOR ID:
2605566
Rleg_3465
View Structure
13
3853340-3853566
(-)
cobalamin
3852837-3853059 (-)
Rleg_3795
Glutaredoxin-like protein NrdH
Rleg_3795
Operon
DOOR ID:
576591
Rleg_3793,
Rleg_3794
(nrdI)
,
Rleg_3795
View Structure
14
4007367-4007480
(+)
TPP
4008161-4008998 (+)
Rleg_3934
Binding-protein-dependent transport systems inner membrane component
Rleg_3934
Operon
DOOR ID:
576619
Rleg_3934,
Rleg_3935,
Rleg_3936
View Structure
15
4217923-4218000
(-)
sam-alpha
4216950-4217874 (-)
Rleg_4134
Homoserine O-acetyltransferase (HAT) (1) (Homoserine transacetylase) (HTA)
Rleg_4134
Single gene
DOOR ID:
2605872
Rleg_4134
View Structure
Genome:
Rhizobium leguminosarum bv. trifolii WSM1325
(
NC_012850.1
);
Phylum:
Alphaproteobacteria
a:16:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_012850.1";i:2;s:45:"Rhizobium leguminosarum bv. trifolii WSM1325 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:13:"190373-190451";i:6;s:1:"-";i:7;s:9:"sam-alpha";i:8;s:0:"";i:9;s:13:"189145-190330";i:10;s:1:"-";i:11;s:9:"Rleg_0190";i:12;s:76:"O-succinylhomoserine sulfhydrylase (OSH sulfhydrylase) (OSHS sulfhydrylase) ";i:13;s:9:"Rleg_0190";i:14;s:11:"Single gene";i:15;s:7:"2603910";i:16;s:9:"Rleg_0190";i:17;s:104:"'de novo' L-methionine biosynthetic process [GO:0071266]; homocysteine biosynthetic process [GO:0071268]";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_012850.1";i:2;s:45:"Rhizobium leguminosarum bv. trifolii WSM1325 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:13:"398619-398824";i:6;s:1:"-";i:7;s:9:"ydaO-yuaA";i:8;s:0:"";i:9;s:13:"396502-397516";i:10;s:1:"+";i:11;s:9:"Rleg_0388";i:12;s:68:"Binding-protein-dependent transport systems inner membrane component";i:13;s:9:"Rleg_0388";i:14;s:6:"Operon";i:15;s:6:"576008";i:16;s:39:"Rleg_0388;Rleg_0389;Rleg_0390;Rleg_0391";i:17;s:36:"transmembrane transport [GO:0055085]";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_012850.1";i:2;s:45:"Rhizobium leguminosarum bv. trifolii WSM1325 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"1325893-1326047";i:6;s:1:"+";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"1326138-1327050";i:10;s:1:"+";i:11;s:9:"Rleg_1342";i:12;s:0:"";i:13;s:9:"Rleg_1342";i:14;s:11:"Single gene";i:15;s:7:"2604515";i:16;s:9:"Rleg_1342";i:17;s:0:"";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_012850.1";i:2;s:45:"Rhizobium leguminosarum bv. trifolii WSM1325 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"2080232-2080320";i:6;s:1:"+";i:7;s:7:"glycine";i:8;s:6:"Tandem";i:9;s:15:"2080481-2081618";i:10;s:1:"+";i:11;s:4:"gcvT";i:12;s:33:"Glycine cleavage system T protein";i:13;s:9:"Rleg_2091";i:14;s:6:"Operon";i:15;s:6:"576293";i:16;s:35:"Rleg_2091(gcvT);Rleg_2092;Rleg_2093";i:17;s:38:"glycine catabolic process [GO:0006546]";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_012850.1";i:2;s:45:"Rhizobium leguminosarum bv. trifolii WSM1325 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"2080324-2080404";i:6;s:1:"+";i:7;s:7:"glycine";i:8;s:6:"Tandem";i:9;s:15:"2080481-2081618";i:10;s:1:"+";i:11;s:4:"gcvT";i:12;s:33:"Glycine cleavage system T protein";i:13;s:9:"Rleg_2091";i:14;s:6:"Operon";i:15;s:6:"576293";i:16;s:35:"Rleg_2091(gcvT);Rleg_2092;Rleg_2093";i:17;s:38:"glycine catabolic process [GO:0006546]";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_012850.1";i:2;s:45:"Rhizobium leguminosarum bv. trifolii WSM1325 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"2214445-2214632";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"2213716-2214403";i:10;s:1:"-";i:11;s:9:"Rleg_2211";i:12;s:41:"Cob(II)yrinic acid a;c-diamide reductase ";i:13;s:9:"Rleg_2211";i:14;s:11:"Single gene";i:15;s:7:"2604936";i:16;s:9:"Rleg_2211";i:17;s:0:"";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_012850.1";i:2;s:45:"Rhizobium leguminosarum bv. trifolii WSM1325 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"2267297-2267447";i:6;s:1:"+";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"2267573-2268209";i:10;s:1:"+";i:11;s:9:"Rleg_2262";i:12;s:65:"3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)";i:13;s:9:"Rleg_2262";i:14;s:11:"Single gene";i:15;s:7:"2604966";i:16;s:9:"Rleg_2262";i:17;s:44:"riboflavin biosynthetic process [GO:0009231]";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_012850.1";i:2;s:45:"Rhizobium leguminosarum bv. trifolii WSM1325 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"2378648-2379045";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"2377762-2378272";i:10;s:1:"-";i:11;s:4:"cobU";i:12;s:55:"Bifunctional adenosylcobalamin biosynthesis protein (2)";i:13;s:9:"Rleg_2373";i:14;s:6:"Operon";i:15;s:6:"576343";i:16;s:51:"Rleg_2370;Rleg_2371(cobN);Rleg_2372;Rleg_2373(cobU)";i:17;s:43:"cobalamin biosynthetic process [GO:0009236]";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_012850.1";i:2;s:45:"Rhizobium leguminosarum bv. trifolii WSM1325 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"2599366-2599622";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"2598171-2599188";i:10;s:1:"-";i:11;s:9:"Rleg_2601";i:12;s:27:"Periplasmic binding protein";i:13;s:9:"Rleg_2601";i:14;s:6:"Operon";i:15;s:6:"576373";i:16;s:29:"Rleg_2599;Rleg_2600;Rleg_2601";i:17;s:0:"";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_012850.1";i:2;s:45:"Rhizobium leguminosarum bv. trifolii WSM1325 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"2674475-2674617";i:6;s:1:"+";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"2674695-2675130";i:10;s:1:"+";i:11;s:9:"Rleg_2686";i:12;s:84:"6;7-dimethyl-8-ribityllumazine synthase (DMRL synthase) (LS) (Lumazine synthase) (8)";i:13;s:9:"Rleg_2686";i:14;s:11:"Single gene";i:15;s:7:"2605201";i:16;s:9:"Rleg_2686";i:17;s:44:"riboflavin biosynthetic process [GO:0009231]";i:18;s:15:"View Structure ";}i:11;a:19:{i:0;i:11;i:1;s:11:"NC_012850.1";i:2;s:45:"Rhizobium leguminosarum bv. trifolii WSM1325 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"2764749-2764820";i:6;s:1:"-";i:7;s:3:"SAH";i:8;s:0:"";i:9;s:15:"2763749-2764409";i:10;s:1:"-";i:11;s:9:"Rleg_2784";i:12;s:42:"Nitrile hydratase subunit beta (NHase) (4)";i:13;s:9:"Rleg_2784";i:14;s:6:"Operon";i:15;s:6:"576405";i:16;s:29:"Rleg_2783;Rleg_2784;Rleg_2785";i:17;s:48:"nitrogen compound metabolic process [GO:0006807]";i:18;s:15:"View Structure ";}i:12;a:19:{i:0;i:12;i:1;s:11:"NC_012850.1";i:2;s:45:"Rhizobium leguminosarum bv. trifolii WSM1325 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"3497924-3497999";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"3497662-3497872";i:10;s:1:"-";i:11;s:9:"Rleg_3465";i:12;s:0:"";i:13;s:9:"Rleg_3465";i:14;s:11:"Single gene";i:15;s:7:"2605566";i:16;s:9:"Rleg_3465";i:17;s:0:"";i:18;s:15:"View Structure ";}i:13;a:19:{i:0;i:13;i:1;s:11:"NC_012850.1";i:2;s:45:"Rhizobium leguminosarum bv. trifolii WSM1325 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"3853340-3853566";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"3852837-3853059";i:10;s:1:"-";i:11;s:9:"Rleg_3795";i:12;s:30:"Glutaredoxin-like protein NrdH";i:13;s:9:"Rleg_3795";i:14;s:6:"Operon";i:15;s:6:"576591";i:16;s:35:"Rleg_3793;Rleg_3794(nrdI);Rleg_3795";i:17;s:35:"cell redox homeostasis [GO:0045454]";i:18;s:15:"View Structure ";}i:14;a:19:{i:0;i:14;i:1;s:11:"NC_012850.1";i:2;s:45:"Rhizobium leguminosarum bv. trifolii WSM1325 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"4007367-4007480";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"4008161-4008998";i:10;s:1:"+";i:11;s:9:"Rleg_3934";i:12;s:68:"Binding-protein-dependent transport systems inner membrane component";i:13;s:9:"Rleg_3934";i:14;s:6:"Operon";i:15;s:6:"576619";i:16;s:29:"Rleg_3934;Rleg_3935;Rleg_3936";i:17;s:36:"transmembrane transport [GO:0055085]";i:18;s:15:"View Structure ";}i:15;a:19:{i:0;i:15;i:1;s:11:"NC_012850.1";i:2;s:45:"Rhizobium leguminosarum bv. trifolii WSM1325 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"4217923-4218000";i:6;s:1:"-";i:7;s:9:"sam-alpha";i:8;s:0:"";i:9;s:15:"4216950-4217874";i:10;s:1:"-";i:11;s:9:"Rleg_4134";i:12;s:74:"Homoserine O-acetyltransferase (HAT) (1) (Homoserine transacetylase) (HTA)";i:13;s:9:"Rleg_4134";i:14;s:11:"Single gene";i:15;s:7:"2605872";i:16;s:9:"Rleg_4134";i:17;s:108:"L-methionine biosynthetic process from homoserine via O-succinyl-L-homoserine and cystathionine [GO:0019281]";i:18;s:15:"View Structure ";}}