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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
873663-873736
(-)
SAH
871451-873509 (-)
DMR_07830
Putative Fe hydrogenase
DMR_07830
Operon
DOOR ID:
571772
DMR_07830,
DMR_07840,
DMR_07850
View Structure
2
1645738-1645820
(+)
ZMP-ZTP
1645855-1647115 (+)
glyA
Serine hydroxymethyltransferase (SHMT) (Serine methylase)
DMR_14920
Single gene
DOOR ID:
2595064
DMR_14920
(glyA)
View Structure
3
1716330-1716515
(-)
cobalamin
1715322-1716225 (-)
cbiK
Sirohydrochlorin cobaltochelatase
DMR_15530
Operon
DOOR ID:
571906
DMR_15520,
DMR_15530
(cbiK)
View Structure
4
3288977-3289058
(-)
c-di-GMP-I
3288359-3288818 (-)
DMR_29160
Cytochrome c family protein
DMR_29160
operon
DOOR ID:
572198
DMR_29150,
DMR_29160
View Structure
5
3979075-3979228
(+)
FMN
3979342-3979987 (+)
ribB
3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)
DMR_35270
Single gene
DOOR ID:
2595941
DMR_35270
(ribB)
View Structure
6
4339540-4339624
(-)
c-di-GMP-I
4337193-4337448 (-)
DMR_38300
Uncharacterized protein
DMR_38300
operon
DOOR ID:
572369
DMR_38290,
DMR_38300,
DMR_38310
View Structure
7
5024753-5024905
(+)
cobalamin
5025141-5027241 (+)
nrdD
Anaerobic ribonucleoside-triphosphate reductase class III
DMR_44320
Single gene
DOOR ID:
2596377
DMR_44320
(nrdD)
View Structure
8
5075820-5075955
(+)
ydaO-yuaA
5076260-5078282 (+)
DMR_44700
Hypothetical membrane protein
DMR_44700
Single gene
DOOR ID:
2596395
DMR_44700
View Structure
9
5181156-5181242
(-)
glycine
5179365-5179662 (+)
DMR_45710
DMR_45710
Operon
DOOR ID:
572515
DMR_45700,
DMR_45710
View Structure
Genome:
Desulfovibrio magneticus RS-1
(
NC_012796.1
);
Phylum:
delta/epsilon subdivisions
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