About
Search
Advanced Search
Genomes
Predict
About us
S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
124208-124382
(-)
lysine
123155-124124 (-)
Kole_0108
Aspartate-semialdehyde dehydrogenase (1)
Kole_0108
Operon
DOOR ID:
569234
Kole_0102,
Kole_0103,
Kole_0104,
Kole_0105,
Kole_0106,
Kole_0107,
Kole_0108
View Structure
2
455111-455170
(+)
fluoride
455191-455923 (+)
Kole_0425
Kole_0425
Operon
DOOR ID:
569298
Kole_0425,
Kole_0426,
Kole_0427,
Kole_0428
View Structure
3
1308530-1308649
(+)
FMN
1308738-1309776 (+)
Kole_1231
Riboflavin biosynthesis protein RibD [Includes: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (DRAP deaminase) (93) (HTP reductase)]
Kole_1231
Operon
DOOR ID:
569462
Kole_1231,
Kole_1232,
Kole_1233,
Kole_1234
View Structure
4
1679589-1679737
(+)
glycine
1680218-1682156 (+)
Kole_1568
ATP-dependent zinc metalloprotease FtsH
Kole_1568
Operon
DOOR ID:
569538
Kole_1567,
Kole_1568,
Kole_1569,
Kole_1570,
Kole_1571,
Kole_1572,
Kole_1573,
Kole_1574,
Kole_1575,
Kole_1576,
Kole_1577,
Kole_1578,
Kole_1579,
Kole_1580,
Kole_1581,
Kole_1582,
Kole_1583
View Structure
5
1719087-1719267
(-)
cobalamin
1718138-1719032 (-)
Kole_1602
Periplasmic binding protein
Kole_1602
Single gene
DOOR ID:
2591090
Kole_1602
View Structure
6
2285093-2285195
(-)
TPP
2284068-2285055 (-)
Kole_2154
ABC transporter; periplasmic binding protein; thiB subfamily
Kole_2154
Operon
DOOR ID:
569648
Kole_2153,
Kole_2154
View Structure
Genome:
Kosmotoga olearia TBF 19.5.1
(
NC_012785.1
);
Phylum:
Thermotogae
a:7:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_012785.1";i:2;s:28:"Kosmotoga olearia TBF 19.5.1";i:3;s:11:"Thermotogae";i:4;s:6:"188708";i:5;s:13:"124208-124382";i:6;s:1:"-";i:7;s:6:"lysine";i:8;s:0:"";i:9;s:13:"123155-124124";i:10;s:1:"-";i:11;s:9:"Kole_0108";i:12;s:40:"Aspartate-semialdehyde dehydrogenase (1)";i:13;s:9:"Kole_0108";i:14;s:6:"Operon";i:15;s:6:"569234";i:16;s:69:"Kole_0102;Kole_0103;Kole_0104;Kole_0105;Kole_0106;Kole_0107;Kole_0108";i:17;s:197:"isoleucine biosynthetic process [GO:0009097]; lysine biosynthetic process via diaminopimelate [GO:0009089]; methionine biosynthetic process [GO:0009086]; threonine biosynthetic process [GO:0009088]";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_012785.1";i:2;s:28:"Kosmotoga olearia TBF 19.5.1";i:3;s:11:"Thermotogae";i:4;s:6:"188708";i:5;s:13:"455111-455170";i:6;s:1:"+";i:7;s:8:"fluoride";i:8;s:0:"";i:9;s:13:"455191-455923";i:10;s:1:"+";i:11;s:9:"Kole_0425";i:12;s:0:"";i:13;s:9:"Kole_0425";i:14;s:6:"Operon";i:15;s:6:"569298";i:16;s:39:"Kole_0425;Kole_0426;Kole_0427;Kole_0428";i:17;s:0:"";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_012785.1";i:2;s:28:"Kosmotoga olearia TBF 19.5.1";i:3;s:11:"Thermotogae";i:4;s:6:"188708";i:5;s:15:"1308530-1308649";i:6;s:1:"+";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"1308738-1309776";i:10;s:1:"+";i:11;s:9:"Kole_1231";i:12;s:140:"Riboflavin biosynthesis protein RibD [Includes: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (DRAP deaminase) (93) (HTP reductase)]";i:13;s:9:"Kole_1231";i:14;s:6:"Operon";i:15;s:6:"569462";i:16;s:39:"Kole_1231;Kole_1232;Kole_1233;Kole_1234";i:17;s:44:"riboflavin biosynthetic process [GO:0009231]";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_012785.1";i:2;s:28:"Kosmotoga olearia TBF 19.5.1";i:3;s:11:"Thermotogae";i:4;s:6:"188708";i:5;s:15:"1679589-1679737";i:6;s:1:"+";i:7;s:7:"glycine";i:8;s:0:"";i:9;s:15:"1680218-1682156";i:10;s:1:"+";i:11;s:9:"Kole_1568";i:12;s:40:"ATP-dependent zinc metalloprotease FtsH ";i:13;s:9:"Kole_1568";i:14;s:6:"Operon";i:15;s:6:"569538";i:16;s:169:"Kole_1567;Kole_1568;Kole_1569;Kole_1570;Kole_1571;Kole_1572;Kole_1573;Kole_1574;Kole_1575;Kole_1576;Kole_1577;Kole_1578;Kole_1579;Kole_1580;Kole_1581;Kole_1582;Kole_1583";i:17;s:0:"";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_012785.1";i:2;s:28:"Kosmotoga olearia TBF 19.5.1";i:3;s:11:"Thermotogae";i:4;s:6:"188708";i:5;s:15:"1719087-1719267";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"1718138-1719032";i:10;s:1:"-";i:11;s:9:"Kole_1602";i:12;s:27:"Periplasmic binding protein";i:13;s:9:"Kole_1602";i:14;s:11:"Single gene";i:15;s:7:"2591090";i:16;s:9:"Kole_1602";i:17;s:0:"";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_012785.1";i:2;s:28:"Kosmotoga olearia TBF 19.5.1";i:3;s:11:"Thermotogae";i:4;s:6:"188708";i:5;s:15:"2285093-2285195";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"2284068-2285055";i:10;s:1:"-";i:11;s:9:"Kole_2154";i:12;s:60:"ABC transporter; periplasmic binding protein; thiB subfamily";i:13;s:9:"Kole_2154";i:14;s:6:"Operon";i:15;s:6:"569648";i:16;s:19:"Kole_2153;Kole_2154";i:17;s:31:"thiamine transport [GO:0015888]";i:18;s:15:"View Structure ";}}