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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
201075-201173
(-)
SAM
199728-200973 (-)
EUBELI_00171
S-adenosylmethionine synthase (AdoMet synthase) (MAT) (Methionine adenosyltransferase)
EUBELI_00171
Single gene
DOOR ID:
2587077
EUBELI_00171
View Structure
2
398951-399037
(+)
c-di-GMP-I
399107-399905 (+)
EUBELI_00368
Uncharacterized protein
EUBELI_00368
single gene
DOOR ID:
2587138
EUBELI_00368
View Structure
3
545635-545750
(+)
c-di-GMP-I
545812-546604 (+)
EUBELI_00537
Uncharacterized protein
EUBELI_00537
operon
DOOR ID:
567267
EUBELI_00537,
EUBELI_00538
View Structure
4
710587-710703
(+)
TPP
710746-712093 (+)
EUBELI_00711
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
EUBELI_00711
Single gene
DOOR ID:
2587214
EUBELI_00711
View Structure
5
1345470-1345607
(-)
c-di-GMP-I
1344905-1345259 (-)
EUBELI_01308
Uncharacterized protein
EUBELI_01308
single gene
DOOR ID:
2587335
EUBELI_01308
View Structure
6
1531521-1531605
(-)
glycine
1529604-1531275 (-)
EUBELI_01474
Formate--tetrahydrofolate ligase (Formyltetrahydrofolate synthetase) (FHS) (FTHFS)
EUBELI_01474
Single gene
DOOR ID:
2587374
EUBELI_01474
View Structure
7
1641641-1641813
(-)
lysine
1640611-1641538 (-)
EUBELI_01589
4-hydroxy-tetrahydrodipicolinate synthase (HTPA synthase)
EUBELI_01589
Operon
DOOR ID:
567480
EUBELI_01588,
EUBELI_01589
View Structure
8
1954632-1954704
(+)
fluoride
1956105-1957161 (-)
EUBELI_01892
Sulfate transport system substrate-binding protein
EUBELI_01892
Operon
DOOR ID:
567548
EUBELI_01892,
EUBELI_01893,
EUBELI_01894,
EUBELI_01895,
EUBELI_01896
View Structure
9
1964188-1964236
(+)
PreQ1
1964245-1964740 (+)
EUBELI_01901
EUBELI_01901
Single gene
DOOR ID:
2587492
EUBELI_01901
View Structure
Genome:
Eubacterium eligens ATCC 27750
(
NC_012778.1
);
Phylum:
Firmicutes
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thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_012778.1";i:2;s:31:"Eubacterium eligens ATCC 27750 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1345470-1345607";i:6;s:1:"-";i:7;s:10:"c-di-GMP-I";i:8;s:0:"";i:9;s:15:"1344905-1345259";i:10;s:1:"-";i:11;s:12:"EUBELI_01308";i:12;s:23:"Uncharacterized protein";i:13;s:12:"EUBELI_01308";i:14;s:11:"single gene";i:15;s:7:"2587335";i:16;s:12:"EUBELI_01308";i:17;s:0:"";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_012778.1";i:2;s:31:"Eubacterium eligens ATCC 27750 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1531521-1531605";i:6;s:1:"-";i:7;s:7:"glycine";i:8;s:0:"";i:9;s:15:"1529604-1531275";i:10;s:1:"-";i:11;s:12:"EUBELI_01474";i:12;s:83:"Formate--tetrahydrofolate ligase (Formyltetrahydrofolate synthetase) (FHS) (FTHFS)";i:13;s:12:"EUBELI_01474";i:14;s:11:"Single gene";i:15;s:7:"2587374";i:16;s:12:"EUBELI_01474";i:17;s:45:"tetrahydrofolate interconversion [GO:0035999]";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_012778.1";i:2;s:31:"Eubacterium eligens ATCC 27750 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1641641-1641813";i:6;s:1:"-";i:7;s:6:"lysine";i:8;s:0:"";i:9;s:15:"1640611-1641538";i:10;s:1:"-";i:11;s:12:"EUBELI_01589";i:12;s:58:"4-hydroxy-tetrahydrodipicolinate synthase (HTPA synthase) ";i:13;s:12:"EUBELI_01589";i:14;s:6:"Operon";i:15;s:6:"567480";i:16;s:25:"EUBELI_01588;EUBELI_01589";i:17;s:111:"diaminopimelate biosynthetic process [GO:0019877]; lysine biosynthetic process via diaminopimelate [GO:0009089]";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_012778.1";i:2;s:31:"Eubacterium eligens ATCC 27750 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1954632-1954704";i:6;s:1:"+";i:7;s:8:"fluoride";i:8;s:0:"";i:9;s:15:"1956105-1957161";i:10;s:1:"-";i:11;s:12:"EUBELI_01892";i:12;s:50:"Sulfate transport system substrate-binding protein";i:13;s:12:"EUBELI_01892";i:14;s:6:"Operon";i:15;s:6:"567548";i:16;s:64:"EUBELI_01892;EUBELI_01893;EUBELI_01894;EUBELI_01895;EUBELI_01896";i:17;s:0:"";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_012778.1";i:2;s:31:"Eubacterium eligens ATCC 27750 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:15:"1964188-1964236";i:6;s:1:"+";i:7;s:5:"PreQ1";i:8;s:0:"";i:9;s:15:"1964245-1964740";i:10;s:1:"+";i:11;s:12:"EUBELI_01901";i:12;s:0:"";i:13;s:12:"EUBELI_01901";i:14;s:11:"Single gene";i:15;s:7:"2587492";i:16;s:12:"EUBELI_01901";i:17;s:0:"";i:18;s:15:"View Structure ";}}
