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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
75510-75609
(-)
TPP
74495-75479 (-)
tbpA
BWG_0064
Operon
DOOR ID:
566359
BWG_0062
(thiQ)
,
BWG_0063
(thiP)
,
BWG_0064
(tbpA)
View Structure
2
719103-719247
(+)
MOCO
720245-720758 (+)
moaB
BWG_0635
Operon
DOOR ID:
566481
BWG_0634
(moaA)
,
BWG_0635
(moaB)
,
BWG_0636
(moaC)
,
BWG_0637
(moaD)
,
BWG_0638
(moaE)
View Structure
3
1795539-1795640
(+)
yybP-ykoY
1795770-1796337 (+)
yebN
Probable manganese efflux pump MntP
BWG_1634
Single gene
DOOR ID:
2586176
BWG_1634
(yebN)
View Structure
4
2075841-2075937
(-)
TPP
2075017-2075806 (-)
thiM
Hydroxyethylthiazole kinase (0) (4-methyl-5-beta-hydroxyethylthiazole kinase) (TH kinase) (Thz kinase)
BWG_1890
Operon
DOOR ID:
566709
BWG_1887
(yegW)
,
BWG_1888
(yegX)
,
BWG_1889
(thiD)
,
BWG_1890
(thiM)
View Structure
5
3069740-3069888
(-)
FMN
3068982-3069636 (-)
ribB
3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)
BWG_2753
Single gene
DOOR ID:
2586539
BWG_2753
(ribB)
View Structure
6
4051076-4051266
(+)
cobalamin
4051330-4053175 (+)
btuB
BWG_3634
Operon
DOOR ID:
567082
BWG_3634
(btuB)
,
BWG_3635
(murI)
View Structure
7
4083883-4083983
(-)
TPP
4081906-4083802 (-)
thiC
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
BWG_3654
Operon
DOOR ID:
567087
BWG_3649
(thiH)
,
BWG_3650
(thiG)
,
BWG_3651
(thiS)
,
BWG_3652
(thiF)
,
BWG_3653
(thiE)
,
BWG_3654
(thiC)
View Structure
8
4121028-4121224
(-)
lysine
4119586-4120936 (-)
lysC
BWG_3680
Single gene
DOOR ID:
2586863
BWG_3680
(lysC)
View Structure
9
4313569-4313615
(+)
mini-ykkC
4313632-4313950 (+)
sugE
BWG_3863
Single gene
DOOR ID:
2586938
BWG_3863
(sugE)
View Structure
10
4404174-4404289
(+)
Mg sensor
4404382-4407079 (+)
mgtA
BWG_3950
Single gene
DOOR ID:
2586975
BWG_3950
(mgtA)
View Structure
Genome:
Escherichia coli BW2952
(
NC_012759.1
);
Phylum:
Gammaproteobacteria
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thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_012759.1";i:2;s:24:"Escherichia coli BW2952 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"3069740-3069888";i:6;s:1:"-";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"3068982-3069636";i:10;s:1:"-";i:11;s:4:"ribB";i:12;s:65:"3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)";i:13;s:8:"BWG_2753";i:14;s:11:"Single gene";i:15;s:7:"2586539";i:16;s:14:"BWG_2753(ribB)";i:17;s:44:"riboflavin biosynthetic process [GO:0009231]";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_012759.1";i:2;s:24:"Escherichia coli BW2952 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"4051076-4051266";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"4051330-4053175";i:10;s:1:"+";i:11;s:4:"btuB";i:12;s:0:"";i:13;s:8:"BWG_3634";i:14;s:6:"Operon";i:15;s:6:"567082";i:16;s:29:"BWG_3634(btuB);BWG_3635(murI)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_012759.1";i:2;s:24:"Escherichia coli BW2952 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"4083883-4083983";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"4081906-4083802";i:10;s:1:"-";i:11;s:4:"thiC";i:12;s:176:"Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)";i:13;s:8:"BWG_3654";i:14;s:6:"Operon";i:15;s:6:"567087";i:16;s:89:"BWG_3649(thiH);BWG_3650(thiG);BWG_3651(thiS);BWG_3652(thiF);BWG_3653(thiE);BWG_3654(thiC)";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_012759.1";i:2;s:24:"Escherichia coli BW2952 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"4121028-4121224";i:6;s:1:"-";i:7;s:6:"lysine";i:8;s:0:"";i:9;s:15:"4119586-4120936";i:10;s:1:"-";i:11;s:4:"lysC";i:12;s:0:"";i:13;s:8:"BWG_3680";i:14;s:11:"Single gene";i:15;s:7:"2586863";i:16;s:14:"BWG_3680(lysC)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_012759.1";i:2;s:24:"Escherichia coli BW2952 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"4313569-4313615";i:6;s:1:"+";i:7;s:9:"mini-ykkC";i:8;s:0:"";i:9;s:15:"4313632-4313950";i:10;s:1:"+";i:11;s:4:"sugE";i:12;s:0:"";i:13;s:8:"BWG_3863";i:14;s:11:"Single gene";i:15;s:7:"2586938";i:16;s:14:"BWG_3863(sugE)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_012759.1";i:2;s:24:"Escherichia coli BW2952 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"4404174-4404289";i:6;s:1:"+";i:7;s:9:"Mg sensor";i:8;s:0:"";i:9;s:15:"4404382-4407079";i:10;s:1:"+";i:11;s:4:"mgtA";i:12;s:0:"";i:13;s:8:"BWG_3950";i:14;s:11:"Single gene";i:15;s:7:"2586975";i:16;s:14:"BWG_3950(mgtA)";i:17;s:0:"";i:18;s:15:"View Structure ";}}
