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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
116805-116923
(-)
glycine
115589-116708 (-)
bglu_1g01030
Aminomethyltransferase (0) (Glycine cleavage system T protein)
bglu_1g01030
Operon
DOOR ID:
563500
bglu_1g01010,
bglu_1g01020,
bglu_1g01030
View Structure
2
116961-117059
(-)
glycine
115589-116708 (-)
bglu_1g01030
Aminomethyltransferase (0) (Glycine cleavage system T protein)
bglu_1g01030
Operon
DOOR ID:
563500
bglu_1g01010,
bglu_1g01020,
bglu_1g01030
View Structure
3
209043-209112
(+)
SAH
209212-210631 (+)
bglu_1g01990
Adenosylhomocysteinase (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase)
bglu_1g01990
Single gene
DOOR ID:
2579913
bglu_1g01990
View Structure
4
338112-338248
(+)
TPP
338473-339640 (+)
bglu_1g03160
FAD dependent oxidoreductase
bglu_1g03160
Operon
DOOR ID:
563539
bglu_1g03160,
bglu_1g03170,
bglu_1g03180,
bglu_1g03190
View Structure
5
733207-733307
(+)
ZMP-ZTP
733447-734695 (+)
bglu_1g06780
Serine hydroxymethyltransferase (SHMT) (Serine methylase)
bglu_1g06780
Operon
DOOR ID:
563618
bglu_1g06780,
bglu_1g06790
View Structure
6
1141232-1141320
(-)
TPP
1139207-1141139 (-)
bglu_1g10430
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
bglu_1g10430
Single gene
DOOR ID:
2580205
bglu_1g10430
View Structure
7
2016420-2016610
(+)
cobalamin
2016842-2018156 (+)
bglu_1g18430
Nitrite/sulfite reductase domain-containing protein
bglu_1g18430
Operon
DOOR ID:
563825
bglu_1g18430,
bglu_1g18440,
bglu_1g18450
View Structure
8
2031970-2032235
(-)
cobalamin
2030733-2031801 (-)
bglu_1g18530
Cobalamin biosynthesis protein CobW
bglu_1g18530
Operon
DOOR ID:
563826
bglu_1g18500,
bglu_1g18510,
bglu_1g18520,
bglu_1g18530
View Structure
9
2032328-2032577
(+)
cobalamin
2032795-2033254 (+)
bglu_1g18540
Cobalamin biosynthesis protein CbiG
bglu_1g18540
Operon
DOOR ID:
563827
bglu_1g18540,
bglu_1g18550,
bglu_1g18560
View Structure
10
2368864-2368952
(+)
SAH
2369273-2370215 (-)
bglu_1g21810
Transcriptional regulator; LysR family
bglu_1g21810
Single gene
DOOR ID:
2580622
bglu_1g21810
View Structure
11
2987503-2987550
(-)
mini-ykkC
2987160-2987481 (-)
bglu_1g26230
bglu_1g26230
Single gene
DOOR ID:
2580813
bglu_1g26230
View Structure
12
3203359-3203641
(-)
cobalamin
3201348-3203283 (-)
bglu_1g28210
Putative TonB-dependent vitamin B12 receptor BtuB
bglu_1g28210
Operon
DOOR ID:
564010
bglu_1g28170,
bglu_1g28180,
bglu_1g28190,
bglu_1g28200,
bglu_1g28210
View Structure
Genome:
Burkholderia glumae BGR1 chromosome I
(
NC_012724.2
);
Phylum:
Betaproteobacteria
a:13:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_012724.2";i:2;s:37:"Burkholderia glumae BGR1 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:13:"116805-116923";i:6;s:1:"-";i:7;s:7:"glycine";i:8;s:6:"Tandem";i:9;s:13:"115589-116708";i:10;s:1:"-";i:11;s:12:"bglu_1g01030";i:12;s:62:"Aminomethyltransferase (0) (Glycine cleavage system T protein)";i:13;s:12:"bglu_1g01030";i:14;s:6:"Operon";i:15;s:6:"563500";i:16;s:38:"bglu_1g01010;bglu_1g01020;bglu_1g01030";i:17;s:64:"glycine decarboxylation via glycine cleavage system [GO:0019464]";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_012724.2";i:2;s:37:"Burkholderia glumae BGR1 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:13:"116961-117059";i:6;s:1:"-";i:7;s:7:"glycine";i:8;s:6:"Tandem";i:9;s:13:"115589-116708";i:10;s:1:"-";i:11;s:12:"bglu_1g01030";i:12;s:62:"Aminomethyltransferase (0) (Glycine cleavage system T protein)";i:13;s:12:"bglu_1g01030";i:14;s:6:"Operon";i:15;s:6:"563500";i:16;s:38:"bglu_1g01010;bglu_1g01020;bglu_1g01030";i:17;s:64:"glycine decarboxylation via glycine cleavage system [GO:0019464]";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_012724.2";i:2;s:37:"Burkholderia glumae BGR1 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:13:"209043-209112";i:6;s:1:"+";i:7;s:3:"SAH";i:8;s:0:"";i:9;s:13:"209212-210631";i:10;s:1:"+";i:11;s:12:"bglu_1g01990";i:12;s:73:"Adenosylhomocysteinase (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase)";i:13;s:12:"bglu_1g01990";i:14;s:11:"Single gene";i:15;s:7:"2579913";i:16;s:12:"bglu_1g01990";i:17;s:96:"one-carbon metabolic process [GO:0006730]; S-adenosylhomocysteine catabolic process [GO:0019510]";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_012724.2";i:2;s:37:"Burkholderia glumae BGR1 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:13:"338112-338248";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:13:"338473-339640";i:10;s:1:"+";i:11;s:12:"bglu_1g03160";i:12;s:28:"FAD dependent oxidoreductase";i:13;s:12:"bglu_1g03160";i:14;s:6:"Operon";i:15;s:6:"563539";i:16;s:51:"bglu_1g03160;bglu_1g03170;bglu_1g03180;bglu_1g03190";i:17;s:43:"D-amino acid metabolic process [GO:0046416]";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_012724.2";i:2;s:37:"Burkholderia glumae BGR1 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:13:"733207-733307";i:6;s:1:"+";i:7;s:7:"ZMP-ZTP";i:8;s:0:"";i:9;s:13:"733447-734695";i:10;s:1:"+";i:11;s:12:"bglu_1g06780";i:12;s:58:"Serine hydroxymethyltransferase (SHMT) (Serine methylase) ";i:13;s:12:"bglu_1g06780";i:14;s:6:"Operon";i:15;s:6:"563618";i:16;s:25:"bglu_1g06780;bglu_1g06790";i:17;s:100:"glycine biosynthetic process from serine [GO:0019264]; tetrahydrofolate interconversion [GO:0035999]";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_012724.2";i:2;s:37:"Burkholderia glumae BGR1 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"1141232-1141320";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"1139207-1141139";i:10;s:1:"-";i:11;s:12:"bglu_1g10430";i:12;s:176:"Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)";i:13;s:12:"bglu_1g10430";i:14;s:11:"Single gene";i:15;s:7:"2580205";i:16;s:12:"bglu_1g10430";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_012724.2";i:2;s:37:"Burkholderia glumae BGR1 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"2016420-2016610";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"2016842-2018156";i:10;s:1:"+";i:11;s:12:"bglu_1g18430";i:12;s:51:"Nitrite/sulfite reductase domain-containing protein";i:13;s:12:"bglu_1g18430";i:14;s:6:"Operon";i:15;s:6:"563825";i:16;s:38:"bglu_1g18430;bglu_1g18440;bglu_1g18450";i:17;s:0:"";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_012724.2";i:2;s:37:"Burkholderia glumae BGR1 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"2031970-2032235";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"2030733-2031801";i:10;s:1:"-";i:11;s:12:"bglu_1g18530";i:12;s:35:"Cobalamin biosynthesis protein CobW";i:13;s:12:"bglu_1g18530";i:14;s:6:"Operon";i:15;s:6:"563826";i:16;s:51:"bglu_1g18500;bglu_1g18510;bglu_1g18520;bglu_1g18530";i:17;s:43:"cobalamin biosynthetic process [GO:0009236]";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_012724.2";i:2;s:37:"Burkholderia glumae BGR1 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"2032328-2032577";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"2032795-2033254";i:10;s:1:"+";i:11;s:12:"bglu_1g18540";i:12;s:35:"Cobalamin biosynthesis protein CbiG";i:13;s:12:"bglu_1g18540";i:14;s:6:"Operon";i:15;s:6:"563827";i:16;s:38:"bglu_1g18540;bglu_1g18550;bglu_1g18560";i:17;s:43:"cobalamin biosynthetic process [GO:0009236]";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_012724.2";i:2;s:37:"Burkholderia glumae BGR1 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"2368864-2368952";i:6;s:1:"+";i:7;s:3:"SAH";i:8;s:0:"";i:9;s:15:"2369273-2370215";i:10;s:1:"-";i:11;s:12:"bglu_1g21810";i:12;s:38:"Transcriptional regulator; LysR family";i:13;s:12:"bglu_1g21810";i:14;s:11:"Single gene";i:15;s:7:"2580622";i:16;s:12:"bglu_1g21810";i:17;s:41:"transcription; DNA-templated [GO:0006351]";i:18;s:15:"View Structure ";}i:11;a:19:{i:0;i:11;i:1;s:11:"NC_012724.2";i:2;s:37:"Burkholderia glumae BGR1 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"2987503-2987550";i:6;s:1:"-";i:7;s:9:"mini-ykkC";i:8;s:0:"";i:9;s:15:"2987160-2987481";i:10;s:1:"-";i:11;s:12:"bglu_1g26230";i:12;s:0:"";i:13;s:12:"bglu_1g26230";i:14;s:11:"Single gene";i:15;s:7:"2580813";i:16;s:12:"bglu_1g26230";i:17;s:0:"";i:18;s:15:"View Structure ";}i:12;a:19:{i:0;i:12;i:1;s:11:"NC_012724.2";i:2;s:37:"Burkholderia glumae BGR1 chromosome I";i:3;s:18:"Betaproteobacteria";i:4;s:5:"28216";i:5;s:15:"3203359-3203641";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"3201348-3203283";i:10;s:1:"-";i:11;s:12:"bglu_1g28210";i:12;s:49:"Putative TonB-dependent vitamin B12 receptor BtuB";i:13;s:12:"bglu_1g28210";i:14;s:6:"Operon";i:15;s:6:"564010";i:16;s:64:"bglu_1g28170;bglu_1g28180;bglu_1g28190;bglu_1g28200;bglu_1g28210";i:17;s:0:"";i:18;s:15:"View Structure ";}}