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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
42902-43136
(+)
cobalamin
43400-43643 (+)
ckrop_0037
ckrop_0037
Operon
DOOR ID:
562633
ckrop_0037,
ckrop_0038
View Structure
2
371662-371828
(+)
glycine
371862-375000 (+)
ckrop_0298
Glycine dehydrogenase (aminomethyl-transferring)
ckrop_0298
Operon
DOOR ID:
562686
ckrop_0298,
ckrop_0299
(gcvT)
,
ckrop_0300
View Structure
3
506247-506315
(+)
cobalamin
506383-507607 (+)
ckrop_0414
ABC-type transport system; substrate-binding protein
ckrop_0414
Operon
DOOR ID:
562710
ckrop_0414,
ckrop_0415,
ckrop_0416
View Structure
4
639366-639537
(-)
FMN
638584-639319 (-)
ckrop_0534
Riboflavin transporter
ckrop_0534
Single gene
DOOR ID:
2578125
ckrop_0534
View Structure
5
717019-717191
(+)
TPP
717796-719410 (+)
ckrop_0611
ABC-type transport system; ATP-binding protein
ckrop_0611
Operon
DOOR ID:
562747
ckrop_0610,
ckrop_0611,
ckrop_0612,
ckrop_0613
View Structure
6
2002546-2002654
(+)
TPP
2004619-2005285 (+)
thiE
Thiamine-phosphate synthase (TP synthase) (TPS) (Thiamine-phosphate pyrophosphorylase) (TMP pyrophosphorylase) (TMP-PPase)
ckrop_1710
Single gene
DOOR ID:
2578575
ckrop_1710
(thiE)
View Structure
7
2013315-2013423
(-)
TPP
2011641-2011947 (-)
thiS
Thiamine-biosynthesis protein
ckrop_1716
Operon
DOOR ID:
562983
ckrop_1714,
ckrop_1715
(thiG)
,
ckrop_1716
(thiS)
View Structure
8
2022596-2022885
(+)
cobalamin
2022920-2025311 (+)
ckrop_1726
5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (4)
ckrop_1726
Single gene
DOOR ID:
2578582
ckrop_1726
View Structure
Genome:
Corynebacterium kroppenstedtii DSM 44385
(
NC_012704.1
);
Phylum:
Actinobacteria
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