About
Search
Advanced Search
Genomes
Predict
About us
S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
246930-247022
(-)
TPP
246077-246881 (-)
Tola_0219
Hydroxyethylthiazole kinase (0) (4-methyl-5-beta-hydroxyethylthiazole kinase) (TH kinase) (Thz kinase)
Tola_0219
Operon
DOOR ID:
561198
Tola_0217,
Tola_0218,
Tola_0219
View Structure
2
427804-427998
(+)
cobalamin
428050-429904 (+)
Tola_0378
Vitamin B12 transporter BtuB (Cobalamin receptor) (Outer membrane cobalamin translocator)
Tola_0378
Single gene
DOOR ID:
2575280
Tola_0378
View Structure
3
1034201-1034287
(+)
c-di-GMP-I
1034355-1036662 (+)
Tola_0954
Peptidase M11 gametolysin
Tola_0954
single gene
DOOR ID:
2575477
Tola_0954
View Structure
4
1164617-1164717
(+)
TPP
1164819-1166667 (+)
Tola_1074
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
Tola_1074
Operon
DOOR ID:
561368
Tola_1074,
Tola_1075,
Tola_1076,
Tola_1077,
Tola_1078,
Tola_1079
View Structure
5
1196634-1196799
(-)
FMN
1195904-1196558 (-)
Tola_1102
3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)
Tola_1102
Single gene
DOOR ID:
2575551
Tola_1102
View Structure
6
1848806-1848981
(-)
cobalamin
1847307-1848681 (-)
Tola_1681
Cobyrinate a;c-diamide synthase (1) (Cobyrinic acid a;c-diamide synthetase)
Tola_1681
Operon
DOOR ID:
561477
Tola_1662
(cobT)
,
Tola_1663
(cobS)
,
Tola_1664,
Tola_1665,
Tola_1666,
Tola_1667,
Tola_1668,
Tola_1669,
Tola_1670,
Tola_1671,
Tola_1672,
Tola_1673,
Tola_1674,
Tola_1675,
Tola_1676,
Tola_1677,
Tola_1678
(cbiD)
,
Tola_1679
(cbiC)
,
Tola_1680
(cobD)
,
Tola_1681
View Structure
7
1926855-1926989
(-)
MOCO
1925303-1925888 (-)
Tola_1759
Molybdenum cofactor guanylyltransferase (MoCo guanylyltransferase) (7) (GTP:molybdopterin guanylyltransferase) (Mo-MPT guanylyltransferase) (Molybdopterin guanylyltransferase) (Molybdopterin-guanine dinucleotide synthase) (MGD synthase)
Tola_1759
Operon
DOOR ID:
561489
Tola_1754,
Tola_1755,
Tola_1756,
Tola_1757,
Tola_1758,
Tola_1759,
Tola_1760
(moaA)
View Structure
8
2283390-2283568
(+)
yybP-ykoY
2283569-2284163 (+)
Tola_2089
Tola_2089
Single gene
DOOR ID:
2575905
Tola_2089
View Structure
9
2356155-2356325
(+)
lysine
2356402-2357758 (+)
Tola_2151
Aspartokinase
Tola_2151
Single gene
DOOR ID:
2575928
Tola_2151
View Structure
10
2830367-2830461
(+)
glycine
2830551-2831925 (+)
Tola_2589
Amino acid carrier protein
Tola_2589
Single gene
DOOR ID:
2576077
Tola_2589
View Structure
11
3182998-3183047
(-)
mini-ykkC
3179347-3182950 (-)
Tola_2899
Tola_2899
Operon
DOOR ID:
561717
Tola_2898,
Tola_2899
View Structure
12
3187227-3187332
(-)
ykkC-yxkD
3186092-3187169 (-)
Tola_2904
ABC transporter periplasmic binding protein; urea carboxylase region
Tola_2904
Operon
DOOR ID:
561718
Tola_2900,
Tola_2901,
Tola_2902,
Tola_2903,
Tola_2904
View Structure
Genome:
Tolumonas auensis DSM 9187
(
NC_012691.1
);
Phylum:
Gammaproteobacteria
a:13:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_012691.1";i:2;s:27:"Tolumonas auensis DSM 9187 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:13:"246930-247022";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:13:"246077-246881";i:10;s:1:"-";i:11;s:9:"Tola_0219";i:12;s:102:"Hydroxyethylthiazole kinase (0) (4-methyl-5-beta-hydroxyethylthiazole kinase) (TH kinase) (Thz kinase)";i:13;s:9:"Tola_0219";i:14;s:6:"Operon";i:15;s:6:"561198";i:16;s:29:"Tola_0217;Tola_0218;Tola_0219";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_012691.1";i:2;s:27:"Tolumonas auensis DSM 9187 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:13:"427804-427998";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:13:"428050-429904";i:10;s:1:"+";i:11;s:9:"Tola_0378";i:12;s:89:"Vitamin B12 transporter BtuB (Cobalamin receptor) (Outer membrane cobalamin translocator)";i:13;s:9:"Tola_0378";i:14;s:11:"Single gene";i:15;s:7:"2575280";i:16;s:9:"Tola_0378";i:17;s:26:"ion transport [GO:0006811]";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_012691.1";i:2;s:27:"Tolumonas auensis DSM 9187 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"1034201-1034287";i:6;s:1:"+";i:7;s:10:"c-di-GMP-I";i:8;s:0:"";i:9;s:15:"1034355-1036662";i:10;s:1:"+";i:11;s:9:"Tola_0954";i:12;s:25:"Peptidase M11 gametolysin";i:13;s:9:"Tola_0954";i:14;s:11:"single gene";i:15;s:7:"2575477";i:16;s:9:"Tola_0954";i:17;s:0:"";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_012691.1";i:2;s:27:"Tolumonas auensis DSM 9187 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"1164617-1164717";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"1164819-1166667";i:10;s:1:"+";i:11;s:9:"Tola_1074";i:12;s:176:"Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)";i:13;s:9:"Tola_1074";i:14;s:6:"Operon";i:15;s:6:"561368";i:16;s:59:"Tola_1074;Tola_1075;Tola_1076;Tola_1077;Tola_1078;Tola_1079";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_012691.1";i:2;s:27:"Tolumonas auensis DSM 9187 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"1196634-1196799";i:6;s:1:"-";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"1195904-1196558";i:10;s:1:"-";i:11;s:9:"Tola_1102";i:12;s:65:"3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)";i:13;s:9:"Tola_1102";i:14;s:11:"Single gene";i:15;s:7:"2575551";i:16;s:9:"Tola_1102";i:17;s:44:"riboflavin biosynthetic process [GO:0009231]";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_012691.1";i:2;s:27:"Tolumonas auensis DSM 9187 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"1848806-1848981";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"1847307-1848681";i:10;s:1:"-";i:11;s:9:"Tola_1681";i:12;s:75:"Cobyrinate a;c-diamide synthase (1) (Cobyrinic acid a;c-diamide synthetase)";i:13;s:9:"Tola_1681";i:14;s:6:"Operon";i:15;s:6:"561477";i:16;s:229:"Tola_1662(cobT);Tola_1663(cobS);Tola_1664;Tola_1665;Tola_1666;Tola_1667;Tola_1668;Tola_1669;Tola_1670;Tola_1671;Tola_1672;Tola_1673;Tola_1674;Tola_1675;Tola_1676;Tola_1677;Tola_1678(cbiD);Tola_1679(cbiC);Tola_1680(cobD);Tola_1681";i:17;s:85:"cobalamin biosynthetic process [GO:0009236]; glutamine metabolic process [GO:0006541]";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_012691.1";i:2;s:27:"Tolumonas auensis DSM 9187 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"1926855-1926989";i:6;s:1:"-";i:7;s:4:"MOCO";i:8;s:0:"";i:9;s:15:"1925303-1925888";i:10;s:1:"-";i:11;s:9:"Tola_1759";i:12;s:236:"Molybdenum cofactor guanylyltransferase (MoCo guanylyltransferase) (7) (GTP:molybdopterin guanylyltransferase) (Mo-MPT guanylyltransferase) (Molybdopterin guanylyltransferase) (Molybdopterin-guanine dinucleotide synthase) (MGD synthase)";i:13;s:9:"Tola_1759";i:14;s:6:"Operon";i:15;s:6:"561489";i:16;s:75:"Tola_1754;Tola_1755;Tola_1756;Tola_1757;Tola_1758;Tola_1759;Tola_1760(moaA)";i:17;s:59:"Mo-molybdopterin cofactor biosynthetic process [GO:0006777]";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_012691.1";i:2;s:27:"Tolumonas auensis DSM 9187 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"2283390-2283568";i:6;s:1:"+";i:7;s:9:"yybP-ykoY";i:8;s:0:"";i:9;s:15:"2283569-2284163";i:10;s:1:"+";i:11;s:9:"Tola_2089";i:12;s:0:"";i:13;s:9:"Tola_2089";i:14;s:11:"Single gene";i:15;s:7:"2575905";i:16;s:9:"Tola_2089";i:17;s:0:"";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_012691.1";i:2;s:27:"Tolumonas auensis DSM 9187 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"2356155-2356325";i:6;s:1:"+";i:7;s:6:"lysine";i:8;s:0:"";i:9;s:15:"2356402-2357758";i:10;s:1:"+";i:11;s:9:"Tola_2151";i:12;s:14:"Aspartokinase ";i:13;s:9:"Tola_2151";i:14;s:11:"Single gene";i:15;s:7:"2575928";i:16;s:9:"Tola_2151";i:17;s:105:"lysine biosynthetic process via diaminopimelate [GO:0009089]; threonine biosynthetic process [GO:0009088]";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_012691.1";i:2;s:27:"Tolumonas auensis DSM 9187 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"2830367-2830461";i:6;s:1:"+";i:7;s:7:"glycine";i:8;s:0:"";i:9;s:15:"2830551-2831925";i:10;s:1:"+";i:11;s:9:"Tola_2589";i:12;s:26:"Amino acid carrier protein";i:13;s:9:"Tola_2589";i:14;s:11:"Single gene";i:15;s:7:"2576077";i:16;s:9:"Tola_2589";i:17;s:0:"";i:18;s:15:"View Structure ";}i:11;a:19:{i:0;i:11;i:1;s:11:"NC_012691.1";i:2;s:27:"Tolumonas auensis DSM 9187 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"3182998-3183047";i:6;s:1:"-";i:7;s:9:"mini-ykkC";i:8;s:0:"";i:9;s:15:"3179347-3182950";i:10;s:1:"-";i:11;s:9:"Tola_2899";i:12;s:0:"";i:13;s:9:"Tola_2899";i:14;s:6:"Operon";i:15;s:6:"561717";i:16;s:19:"Tola_2898;Tola_2899";i:17;s:0:"";i:18;s:15:"View Structure ";}i:12;a:19:{i:0;i:12;i:1;s:11:"NC_012691.1";i:2;s:27:"Tolumonas auensis DSM 9187 ";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"3187227-3187332";i:6;s:1:"-";i:7;s:9:"ykkC-yxkD";i:8;s:0:"";i:9;s:15:"3186092-3187169";i:10;s:1:"-";i:11;s:9:"Tola_2904";i:12;s:68:"ABC transporter periplasmic binding protein; urea carboxylase region";i:13;s:9:"Tola_2904";i:14;s:6:"Operon";i:15;s:6:"561718";i:16;s:49:"Tola_2900;Tola_2901;Tola_2902;Tola_2903;Tola_2904";i:17;s:0:"";i:18;s:15:"View Structure ";}}
