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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
157427-157582
(+)
glmS
157773-159576 (+)
glmS
BAA_0189
Single gene
DOOR ID:
2565660
BAA_0189
(glmS)
View Structure
2
177060-177174
(-)
SAM
176161-176974 (-)
BAA_0207
BAA_0207
Operon
DOOR ID:
556476
BAA_0205,
BAA_0206,
BAA_0207
View Structure
3
185484-185589
(+)
SAM
185719-186643 (+)
BAA_0218
BAA_0218
Operon
DOOR ID:
556478
BAA_0218,
BAA_0219,
BAA_0220,
BAA_0221,
BAA_0222
View Structure
4
196981-197087
(-)
SAM
195207-196848 (-)
BAA_0228
BAA_0228
Single gene
DOOR ID:
2567239
BAA_0228
View Structure
5
260541-260642
(+)
purine
260798-262346 (+)
guaA
GMP synthase [glutamine-hydrolyzing] (GMP synthetase) (Glutamine amidotransferase)
BAA_0311
Single gene
DOOR ID:
2567383
BAA_0311
(guaA)
View Structure
6
262501-262602
(+)
purine
262730-264056 (+)
BAA_0313
BAA_0313
Single gene
DOOR ID:
2567713
BAA_0313
View Structure
7
295231-295332
(+)
purine
295441-295927 (+)
purE
BAA_0343
Operon
DOOR ID:
556489
BAA_0343
(purE)
,
BAA_0344
(purK)
,
BAA_0345
(purB)
,
BAA_0346
(purC)
,
BAA_0347
(purS)
,
BAA_0348
(purQ)
,
BAA_0349
(purL)
,
BAA_0350
(purF)
,
BAA_0351
(purM)
,
BAA_0352
(purN)
,
BAA_0353
(purH)
,
BAA_0354
(purD)
View Structure
8
320505-320611
(+)
SAM
320734-321754 (+)
BAA_0367
BAA_0367
Operon
DOOR ID:
556492
BAA_0367,
BAA_0368,
BAA_0369
View Structure
9
342155-342256
(-)
purine
340755-341952 (-)
BAA_0388
BAA_0388
Single gene
DOOR ID:
2567599
BAA_0388
View Structure
10
370917-371029
(-)
SAM
370197-370830 (-)
BAA_0420
BAA_0420
Single gene
DOOR ID:
2568034
BAA_0420
View Structure
11
393814-393923
(+)
TPP
393995-394802 (+)
thiM
Hydroxyethylthiazole kinase (0) (4-methyl-5-beta-hydroxyethylthiazole kinase) (TH kinase) (Thz kinase)
BAA_0439
Operon
DOOR ID:
556502
BAA_0439
(thiM)
,
BAA_0440
(thiE)
View Structure
12
397192-397276
(+)
c-di-GMP-I
397417-399157 (+)
BAA_0442
BAA_0442
single gene
DOOR ID:
2567718
BAA_0442
View Structure
13
399219-399321
(+)
TPP
399420-399741 (+)
BAA_0444
BAA_0444
Operon
DOOR ID:
556503
BAA_0444,
BAA_0445,
BAA_0446,
BAA_0447
View Structure
14
751999-752111
(+)
TPP
752359-753055 (+)
BAA_0832
BAA_0832
Operon
DOOR ID:
556562
BAA_0832,
BAA_0833,
BAA_0834,
BAA_0835,
BAA_0836
(tenI)
,
BAA_0837
(thiO)
,
BAA_0838
(thiS)
,
BAA_0839
(thiG)
,
BAA_0840,
BAA_0841
(thiD1)
View Structure
15
752172-752275
(+)
TPP
752359-753055 (+)
BAA_0832
BAA_0832
Operon
DOOR ID:
556562
BAA_0832,
BAA_0833,
BAA_0834,
BAA_0835,
BAA_0836
(tenI)
,
BAA_0837
(thiO)
,
BAA_0838
(thiS)
,
BAA_0839
(thiG)
,
BAA_0840,
BAA_0841
(thiD1)
View Structure
16
761308-761453
(+)
ydaO-yuaA
761753-763421 (+)
kdpA
Potassium-transporting ATPase potassium-binding subunit (ATP phosphohydrolase [potassium-transporting] A chain) (Potassium-binding and translocating subunit A) (Potassium-translocating ATPase A chain)
BAA_0847
Operon
DOOR ID:
556564
BAA_0847
(kdpA)
,
BAA_0848
(kdpB)
,
BAA_0849
(kdpC)
,
BAA_0850
(kdpD)
View Structure
17
855162-855343
(-)
lysine
853590-854961 (-)
BAA_0953
BAA_0953
Operon
DOOR ID:
556582
BAA_0952,
BAA_0953
View Structure
18
1269026-1269190
(-)
yybP-ykoY
1268139-1268934 (-)
BAA_1389
BAA_1389
Single gene
DOOR ID:
2565795
BAA_1389
View Structure
19
1298794-1298837
(+)
PreQ1
1298930-1299593 (+)
BAA_1427
7-cyano-7-deazaguanine synthase (0) (7-cyano-7-carbaguanine synthase) (PreQ(0) synthase) (Queuosine biosynthesis protein QueC)
BAA_1427
Operon
DOOR ID:
556658
BAA_1427,
BAA_1428,
BAA_1429
(queE)
,
BAA_1430
View Structure
20
1360886-1361067
(+)
lysine
1361247-1362564 (+)
lysA
BAA_1507
Single gene
DOOR ID:
2565779
BAA_1507
(lysA)
View Structure
21
1362680-1362788
(+)
SAM
1362860-1363004 (+)
BAA_1509
BAA_1509
Single gene
DOOR ID:
2566124
BAA_1509
View Structure
22
1375374-1375479
(+)
SAM
1375574-1376891 (+)
BAA_1523
BAA_1523
Single gene
DOOR ID:
2566462
BAA_1523
View Structure
23
1422588-1422727
(+)
FMN
1422888-1423467 (+)
BAA_1571
BAA_1571
Single gene
DOOR ID:
2567414
BAA_1571
View Structure
24
1497594-1497695
(+)
purine
1497802-1498396 (+)
xpt
Xanthine phosphoribosyltransferase (XPRTase) (2)
BAA_1660
Operon
DOOR ID:
556700
BAA_1659,
BAA_1660
(xpt)
,
BAA_1661
(pbuX)
View Structure
25
1510423-1510586
(+)
ykoK
1510931-1511657 (+)
BAA_1676
BAA_1676
Single gene
DOOR ID:
2566983
BAA_1676
View Structure
26
1542422-1542466
(+)
PreQ1
1542472-1542958 (+)
BAA_1698
BAA_1698
Single gene
DOOR ID:
2566454
BAA_1698
View Structure
27
1696669-1696855
(-)
lysine
1695239-1696469 (-)
dapG1
BAA_1880
Single gene
DOOR ID:
2566757
BAA_1880
(dapG1)
View Structure
28
2221520-2221639
(-)
glycine
2220044-2221412 (-)
BAA_2439
BAA_2439
Single gene
DOOR ID:
2567851
BAA_2439
View Structure
29
2433615-2433720
(+)
TPP
2433816-2434533 (+)
tenA
BAA_2675
Single gene
DOOR ID:
2567695
BAA_2675
(tenA)
View Structure
30
2459384-2459499
(+)
SAM
2459638-2460187 (+)
BAA_2707
BAA_2707
Operon
DOOR ID:
556839
BAA_2707,
BAA_2708,
BAA_2709
View Structure
31
2833673-2833865
(+)
lysine
2833977-2835444 (+)
lysP
BAA_3127
Single gene
DOOR ID:
2567271
BAA_3127
(lysP)
View Structure
32
2953155-2953256
(-)
SAM
2951860-2953066 (-)
BAA_3255
BAA_3255
Single gene
DOOR ID:
2565771
BAA_3255
View Structure
33
3091608-3091706
(-)
SAM
3091247-3091505 (-)
BAA_3394
BAA_3394
Single gene
DOOR ID:
2566607
BAA_3394
View Structure
34
3136920-3137061
(+)
ydaO-yuaA
3137158-3137302 (+)
BAA_3447
BAA_3447
Single gene
DOOR ID:
2567175
BAA_3447
View Structure
35
3605224-3605325
(-)
purine
3604265-3605006 (-)
BAA_3955
BAA_3955
Single gene
DOOR ID:
2567050
BAA_3955
View Structure
36
3859251-3859439
(+)
cobalamin
3859566-3861855 (+)
metE
5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (4) (Cobalamin-independent methionine synthase) (Methionine synthase; vitamin-B12 independent isozyme)
BAA_4241
Single gene
DOOR ID:
2566046
BAA_4241
(metE)
View Structure
37
3890624-3890765
(-)
SAM
3889351-3890533 (-)
mtnK
Methylthioribose kinase (MTR kinase) (00)
BAA_4273
Operon
DOOR ID:
557090
BAA_4272
(mtnA)
,
BAA_4273
(mtnK)
View Structure
38
3892958-3893065
(+)
SAM
3893129-3894374 (+)
mtnW
2;3-diketo-5-methylthiopentyl-1-phosphate enolase (DK-MTP-1-P enolase) (RuBisCO-like protein) (RLP)
BAA_4278
Operon
DOOR ID:
557091
BAA_4278
(mtnW)
,
BAA_4279
(mtnX)
,
BAA_4280
(mtnB)
,
BAA_4281
View Structure
39
3953913-3954056
(+)
FMN
3954367-3955480 (+)
ribD
BAA_4353
Operon
DOOR ID:
557101
BAA_4353
(ribD)
,
BAA_4354
(ribE)
,
BAA_4355
(ribBA)
,
BAA_4357
(ribH)
View Structure
40
3963455-3963517
(-)
glutamine
3961986-3962715 (-)
bioD
ATP-dependent dethiobiotin synthetase BioD (DTB synthetase) (DTBS) (Dethiobiotin synthase)
BAA_4362
Operon
DOOR ID:
557102
BAA_4358
(bioB)
,
BAA_4359,
BAA_4360,
BAA_4361
(bioF)
,
BAA_4362
(bioD)
,
BAA_4363
(bioA)
View Structure
41
4073998-4074107
(-)
SAM
4072094-4073927 (-)
BAA_4496
BAA_4496
Operon
DOOR ID:
557123
BAA_4494
(murG2)
,
BAA_4495
(metH)
,
BAA_4496
View Structure
42
4074310-4074419
(+)
SAM
4074513-4075626 (+)
metI
BAA_4499
Operon
DOOR ID:
557124
BAA_4499
(metI)
,
BAA_4500
View Structure
43
4553590-4553711
(-)
SAM
4552220-4553420 (-)
metK
S-adenosylmethionine synthase (AdoMet synthase) (MAT) (Methionine adenosyltransferase)
BAA_5031
Single gene
DOOR ID:
2566192
BAA_5031
(metK)
View Structure
44
4589452-4589553
(+)
TPP
4589639-4590308 (+)
BAA_5078
BAA_5078
Single gene
DOOR ID:
2566549
BAA_5078
View Structure
45
4739896-4740003
(-)
SAM
4738571-4739597 (-)
BAA_5257
BAA_5257
Operon
DOOR ID:
557265
BAA_5254,
BAA_5255,
BAA_5256,
BAA_5257
View Structure
46
4823759-4823818
(+)
fluoride
4823842-4824277 (+)
BAA_5348
BAA_5348
Operon
DOOR ID:
557285
BAA_5348,
BAA_5349
View Structure
47
4953413-4953528
(-)
TPP
4951539-4953300 (-)
thiC
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
BAA_5491
Single gene
DOOR ID:
2566024
BAA_5491
(thiC)
View Structure
48
5140245-5140350
(-)
SAM
5138853-5140152 (-)
BAA_5683
BAA_5683
Operon
DOOR ID:
557346
BAA_5682
(metA)
,
BAA_5683
View Structure
Genome:
Bacillus anthracis str. A0248
(
NC_012659.1
);
Phylum:
Firmicutes
a:49:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_012659.1";i:2;s:29:"Bacillus anthracis str. A0248";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"157427-157582";i:6;s:1:"+";i:7;s:4:"glmS";i:8;s:0:"";i:9;s:13:"157773-159576";i:10;s:1:"+";i:11;s:4:"glmS";i:12;s:0:"";i:13;s:8:"BAA_0189";i:14;s:11:"Single gene";i:15;s:7:"2565660";i:16;s:14:"BAA_0189(glmS)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_012659.1";i:2;s:29:"Bacillus anthracis str. A0248";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"177060-177174";i:6;s:1:"-";i:7;s:3:"SAM";i:8;s:0:"";i:9;s:13:"176161-176974";i:10;s:1:"-";i:11;s:8:"BAA_0207";i:12;s:0:"";i:13;s:8:"BAA_0207";i:14;s:6:"Operon";i:15;s:6:"556476";i:16;s:26:"BAA_0205;BAA_0206;BAA_0207";i:17;s:0:"";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_012659.1";i:2;s:29:"Bacillus anthracis str. A0248";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"185484-185589";i:6;s:1:"+";i:7;s:3:"SAM";i:8;s:0:"";i:9;s:13:"185719-186643";i:10;s:1:"+";i:11;s:8:"BAA_0218";i:12;s:0:"";i:13;s:8:"BAA_0218";i:14;s:6:"Operon";i:15;s:6:"556478";i:16;s:44:"BAA_0218;BAA_0219;BAA_0220;BAA_0221;BAA_0222";i:17;s:0:"";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_012659.1";i:2;s:29:"Bacillus anthracis str. A0248";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"196981-197087";i:6;s:1:"-";i:7;s:3:"SAM";i:8;s:0:"";i:9;s:13:"195207-196848";i:10;s:1:"-";i:11;s:8:"BAA_0228";i:12;s:0:"";i:13;s:8:"BAA_0228";i:14;s:11:"Single gene";i:15;s:7:"2567239";i:16;s:8:"BAA_0228";i:17;s:0:"";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_012659.1";i:2;s:29:"Bacillus anthracis str. A0248";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"260541-260642";i:6;s:1:"+";i:7;s:6:"purine";i:8;s:0:"";i:9;s:13:"260798-262346";i:10;s:1:"+";i:11;s:4:"guaA";i:12;s:83:"GMP synthase [glutamine-hydrolyzing] (GMP synthetase) (Glutamine amidotransferase)";i:13;s:8:"BAA_0311";i:14;s:11:"Single gene";i:15;s:7:"2567383";i:16;s:14:"BAA_0311(guaA)";i:17;s:79:"glutamine metabolic process [GO:0006541]; GMP biosynthetic process [GO:0006177]";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_012659.1";i:2;s:29:"Bacillus anthracis str. A0248";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"262501-262602";i:6;s:1:"+";i:7;s:6:"purine";i:8;s:0:"";i:9;s:13:"262730-264056";i:10;s:1:"+";i:11;s:8:"BAA_0313";i:12;s:0:"";i:13;s:8:"BAA_0313";i:14;s:11:"Single gene";i:15;s:7:"2567713";i:16;s:8:"BAA_0313";i:17;s:0:"";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_012659.1";i:2;s:29:"Bacillus anthracis str. A0248";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"295231-295332";i:6;s:1:"+";i:7;s:6:"purine";i:8;s:0:"";i:9;s:13:"295441-295927";i:10;s:1:"+";i:11;s:4:"purE";i:12;s:0:"";i:13;s:8:"BAA_0343";i:14;s:6:"Operon";i:15;s:6:"556489";i:16;s:179:"BAA_0343(purE);BAA_0344(purK);BAA_0345(purB);BAA_0346(purC);BAA_0347(purS);BAA_0348(purQ);BAA_0349(purL);BAA_0350(purF);BAA_0351(purM);BAA_0352(purN);BAA_0353(purH);BAA_0354(purD)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_012659.1";i:2;s:29:"Bacillus anthracis str. 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