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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
177071-177149
(-)
sam-alpha
175842-177027 (-)
metZ
O-succinylhomoserine sulfhydrylase (OSH sulfhydrylase) (OSHS sulfhydrylase)
NGR_c01560
Single gene
DOOR ID:
2555285
NGR_c01560
(metZ)
View Structure
2
1594438-1594525
(-)
glycine
1592778-1593141 (-)
gcvH
Glycine cleavage system H protein
NGR_c15480
Operon
DOOR ID:
1182175
NGR_c15470
(gcvP)
,
NGR_c15480
(gcvH)
View Structure
3
1748256-1748468
(-)
cobalamin
1747504-1748212 (-)
bluB
Putative nitroreductase; BluB-like protein
NGR_c16920
Single gene
DOOR ID:
2555952
NGR_c16920
(bluB)
View Structure
4
1880929-1881327
(-)
cobalamin
1880268-1880796 (-)
cobU
Bifunctional adenosylcobalamin biosynthesis protein (2)
NGR_c18210
Operon
DOOR ID:
1182224
NGR_c18200
(cobW)
,
NGR_c18210
(cobU)
View Structure
5
2222074-2222238
(+)
FMN
2222326-2222800 (+)
ribH1
6;7-dimethyl-8-ribityllumazine synthase (DMRL synthase) (LS) (Lumazine synthase) (8)
NGR_c21540
Single gene
DOOR ID:
2556195
NGR_c21540
(ribH1)
View Structure
6
2266248-2266523
(+)
cobalamin
2266562-2266739 (+)
cbtB
Putative cobalt transporter; subunit CbtB
NGR_c21910
Single gene
DOOR ID:
2556211
NGR_c21910
(cbtB)
View Structure
7
2735939-2736141
(-)
cobalamin
2734567-2735815 (-)
NGR_c26320
Putative ring hydroxylating dioxygenase subunit
NGR_c26320
Operon
DOOR ID:
1182366
NGR_c26310,
NGR_c26320
View Structure
8
3321890-3321967
(+)
sam-alpha
3322028-3322952 (+)
metA
Homoserine O-acetyltransferase (HAT) (1) (Homoserine transacetylase) (HTA)
NGR_c31610
Operon
DOOR ID:
1182464
NGR_c31610
(metA)
,
NGR_c31620
View Structure
9
3417308-3417422
(+)
TPP
3417470-3418499 (+)
tbpA
Thiamine ABC transporter periplasmic binding protein
NGR_c32610
Operon
DOOR ID:
1182488
NGR_c32610
(tbpA)
,
NGR_c32620
(thiP)
,
NGR_c32630
View Structure
Genome:
Sinorhizobium fredii NGR234
(
NC_012587.1
);
Phylum:
Alphaproteobacteria
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homocysteine biosynthetic process [GO:0071268]";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_012587.1";i:2;s:28:"Sinorhizobium fredii NGR234 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"1594438-1594525";i:6;s:1:"-";i:7;s:7:"glycine";i:8;s:0:"";i:9;s:15:"1592778-1593141";i:10;s:1:"-";i:11;s:4:"gcvH";i:12;s:33:"Glycine cleavage system H protein";i:13;s:10:"NGR_c15480";i:14;s:6:"Operon";i:15;s:7:"1182175";i:16;s:33:"NGR_c15470(gcvP);NGR_c15480(gcvH)";i:17;s:64:"glycine decarboxylation via glycine cleavage system [GO:0019464]";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_012587.1";i:2;s:28:"Sinorhizobium fredii NGR234 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"1748256-1748468";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"1747504-1748212";i:10;s:1:"-";i:11;s:4:"bluB";i:12;s:42:"Putative nitroreductase; BluB-like protein";i:13;s:10:"NGR_c16920";i:14;s:11:"Single gene";i:15;s:7:"2555952";i:16;s:16:"NGR_c16920(bluB)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_012587.1";i:2;s:28:"Sinorhizobium fredii NGR234 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"1880929-1881327";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"1880268-1880796";i:10;s:1:"-";i:11;s:4:"cobU";i:12;s:55:"Bifunctional adenosylcobalamin biosynthesis protein (2)";i:13;s:10:"NGR_c18210";i:14;s:6:"Operon";i:15;s:7:"1182224";i:16;s:33:"NGR_c18200(cobW);NGR_c18210(cobU)";i:17;s:43:"cobalamin biosynthetic process [GO:0009236]";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_012587.1";i:2;s:28:"Sinorhizobium fredii NGR234 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"2222074-2222238";i:6;s:1:"+";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"2222326-2222800";i:10;s:1:"+";i:11;s:5:"ribH1";i:12;s:84:"6;7-dimethyl-8-ribityllumazine synthase (DMRL synthase) (LS) (Lumazine synthase) (8)";i:13;s:10:"NGR_c21540";i:14;s:11:"Single gene";i:15;s:7:"2556195";i:16;s:17:"NGR_c21540(ribH1)";i:17;s:44:"riboflavin biosynthetic process [GO:0009231]";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_012587.1";i:2;s:28:"Sinorhizobium fredii NGR234 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"2266248-2266523";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"2266562-2266739";i:10;s:1:"+";i:11;s:4:"cbtB";i:12;s:41:"Putative cobalt transporter; subunit CbtB";i:13;s:10:"NGR_c21910";i:14;s:11:"Single gene";i:15;s:7:"2556211";i:16;s:16:"NGR_c21910(cbtB)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_012587.1";i:2;s:28:"Sinorhizobium fredii NGR234 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"2735939-2736141";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"2734567-2735815";i:10;s:1:"-";i:11;s:10:"NGR_c26320";i:12;s:47:"Putative ring hydroxylating dioxygenase subunit";i:13;s:10:"NGR_c26320";i:14;s:6:"Operon";i:15;s:7:"1182366";i:16;s:21:"NGR_c26310;NGR_c26320";i:17;s:39:"cellular metabolic process [GO:0044237]";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_012587.1";i:2;s:28:"Sinorhizobium fredii NGR234 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"3321890-3321967";i:6;s:1:"+";i:7;s:9:"sam-alpha";i:8;s:0:"";i:9;s:15:"3322028-3322952";i:10;s:1:"+";i:11;s:4:"metA";i:12;s:74:"Homoserine O-acetyltransferase (HAT) (1) (Homoserine transacetylase) (HTA)";i:13;s:10:"NGR_c31610";i:14;s:6:"Operon";i:15;s:7:"1182464";i:16;s:27:"NGR_c31610(metA);NGR_c31620";i:17;s:108:"L-methionine biosynthetic process from homoserine via O-succinyl-L-homoserine and cystathionine [GO:0019281]";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_012587.1";i:2;s:28:"Sinorhizobium fredii NGR234 ";i:3;s:19:"Alphaproteobacteria";i:4;s:5:"28211";i:5;s:15:"3417308-3417422";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"3417470-3418499";i:10;s:1:"+";i:11;s:4:"tbpA";i:12;s:52:"Thiamine ABC transporter periplasmic binding protein";i:13;s:10:"NGR_c32610";i:14;s:6:"Operon";i:15;s:7:"1182488";i:16;s:44:"NGR_c32610(tbpA);NGR_c32620(thiP);NGR_c32630";i:17;s:31:"thiamine transport [GO:0015888]";i:18;s:15:"View Structure ";}}
