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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
5702-5926
(-)
cobalamin
3822-5658 (-)
btuB
Vitamin B12 transporter BtuB (Cobalamin receptor) (Outer membrane cobalamin translocator)
VC395_0005
Single gene
DOOR ID:
2552550
VC395_0005
(btuB)
View Structure
2
116739-116837
(-)
TPP
114700-116638 (-)
thiC
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
VC395_0119
Operon
DOOR ID:
1308797
VC395_0119
(thiC)
,
VC395_0118
(thiE)
,
VC395_0117
(thiF)
,
VC395_0116
(thiS)
,
VC395_0115
(thiG)
,
VC395_0114
(thiH)
View Structure
3
156485-156594
(-)
yybP-ykoY
155837-156440 (-)
VC395_0158
VC395_0158
Single gene
DOOR ID:
2552616
VC395_0158
View Structure
4
463690-463867
(-)
lysine
462223-463663 (-)
lysC
VC395_0435
Single gene
DOOR ID:
2552695
VC395_0435
(lysC)
View Structure
5
1115172-1115311
(+)
MOCO
1116348-1116861 (+)
moaB
VC395_1039
Operon
DOOR ID:
1308981
VC395_1038
(moaA)
,
VC395_1039
(moaB)
,
VC395_1040
(moaC)
,
VC395_1041
(moaD)
,
VC395_1042
(moaE)
View Structure
6
1254992-1255174
(+)
lysine
1255289-1256891 (+)
VC395_1198
VC395_1198
Single gene
DOOR ID:
2552976
VC395_1198
View Structure
7
1464782-1464892
(+)
TPP
1464951-1465800 (+)
thiD
VC395_1415
Single gene
DOOR ID:
2553056
VC395_1415
(thiD)
View Structure
8
1574646-1574693
(+)
mini-ykkC
1574709-1575024 (+)
sugE
VC395_1512
Single gene
DOOR ID:
2553103
VC395_1512
(sugE)
View Structure
9
1610260-1610359
(-)
glycine
1608796-1610167 (-)
VC395_1541
VC395_1541
Single gene
DOOR ID:
2553114
VC395_1541
View Structure
10
1870547-1870716
(+)
ykoK
1870815-1872171 (+)
mgtE-1
VC395_1772
Single gene
DOOR ID:
2553192
VC395_1772
(mgtE-1)
View Structure
11
1945221-1945307
(+)
c-di-GMP-I
1945420-1946008 (+)
VC395_1839
VC395_1839
single gene
DOOR ID:
2553220
VC395_1839
View Structure
12
2806990-2807127
(-)
TPP
2805933-2806926 (-)
tbpA
VC395_2652
Operon
DOOR ID:
1309286
VC395_2650,
VC395_2651,
VC395_2652
(tbpA)
,
VC395_2653,
VC395_2654
(ubiX)
,
VC395_2655
(mpl)
View Structure
Genome:
Vibrio cholerae O395 chromosome I
(
NC_012582.1
);
Phylum:
Gammaproteobacteria
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thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_012582.1";i:2;s:33:"Vibrio cholerae O395 chromosome I";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:13:"156485-156594";i:6;s:1:"-";i:7;s:9:"yybP-ykoY";i:8;s:0:"";i:9;s:13:"155837-156440";i:10;s:1:"-";i:11;s:10:"VC395_0158";i:12;s:0:"";i:13;s:10:"VC395_0158";i:14;s:11:"Single gene";i:15;s:7:"2552616";i:16;s:10:"VC395_0158";i:17;s:0:"";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_012582.1";i:2;s:33:"Vibrio cholerae O395 chromosome I";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:13:"463690-463867";i:6;s:1:"-";i:7;s:6:"lysine";i:8;s:0:"";i:9;s:13:"462223-463663";i:10;s:1:"-";i:11;s:4:"lysC";i:12;s:0:"";i:13;s:10:"VC395_0435";i:14;s:11:"Single gene";i:15;s:7:"2552695";i:16;s:16:"VC395_0435(lysC)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_012582.1";i:2;s:33:"Vibrio cholerae O395 chromosome I";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"1115172-1115311";i:6;s:1:"+";i:7;s:4:"MOCO";i:8;s:0:"";i:9;s:15:"1116348-1116861";i:10;s:1:"+";i:11;s:4:"moaB";i:12;s:0:"";i:13;s:10:"VC395_1039";i:14;s:6:"Operon";i:15;s:7:"1308981";i:16;s:84:"VC395_1038(moaA);VC395_1039(moaB);VC395_1040(moaC);VC395_1041(moaD);VC395_1042(moaE)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_012582.1";i:2;s:33:"Vibrio cholerae O395 chromosome I";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"1254992-1255174";i:6;s:1:"+";i:7;s:6:"lysine";i:8;s:0:"";i:9;s:15:"1255289-1256891";i:10;s:1:"+";i:11;s:10:"VC395_1198";i:12;s:0:"";i:13;s:10:"VC395_1198";i:14;s:11:"Single gene";i:15;s:7:"2552976";i:16;s:10:"VC395_1198";i:17;s:0:"";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_012582.1";i:2;s:33:"Vibrio cholerae O395 chromosome I";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"1464782-1464892";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"1464951-1465800";i:10;s:1:"+";i:11;s:4:"thiD";i:12;s:0:"";i:13;s:10:"VC395_1415";i:14;s:11:"Single gene";i:15;s:7:"2553056";i:16;s:16:"VC395_1415(thiD)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_012582.1";i:2;s:33:"Vibrio cholerae O395 chromosome I";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"1574646-1574693";i:6;s:1:"+";i:7;s:9:"mini-ykkC";i:8;s:0:"";i:9;s:15:"1574709-1575024";i:10;s:1:"+";i:11;s:4:"sugE";i:12;s:0:"";i:13;s:10:"VC395_1512";i:14;s:11:"Single gene";i:15;s:7:"2553103";i:16;s:16:"VC395_1512(sugE)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_012582.1";i:2;s:33:"Vibrio cholerae O395 chromosome I";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"1610260-1610359";i:6;s:1:"-";i:7;s:7:"glycine";i:8;s:0:"";i:9;s:15:"1608796-1610167";i:10;s:1:"-";i:11;s:10:"VC395_1541";i:12;s:0:"";i:13;s:10:"VC395_1541";i:14;s:11:"Single gene";i:15;s:7:"2553114";i:16;s:10:"VC395_1541";i:17;s:0:"";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_012582.1";i:2;s:33:"Vibrio cholerae O395 chromosome I";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"1870547-1870716";i:6;s:1:"+";i:7;s:4:"ykoK";i:8;s:0:"";i:9;s:15:"1870815-1872171";i:10;s:1:"+";i:11;s:6:"mgtE-1";i:12;s:0:"";i:13;s:10:"VC395_1772";i:14;s:11:"Single gene";i:15;s:7:"2553192";i:16;s:18:"VC395_1772(mgtE-1)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:11;a:19:{i:0;i:11;i:1;s:11:"NC_012582.1";i:2;s:33:"Vibrio cholerae O395 chromosome I";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"1945221-1945307";i:6;s:1:"+";i:7;s:10:"c-di-GMP-I";i:8;s:0:"";i:9;s:15:"1945420-1946008";i:10;s:1:"+";i:11;s:10:"VC395_1839";i:12;s:0:"";i:13;s:10:"VC395_1839";i:14;s:11:"single gene";i:15;s:7:"2553220";i:16;s:10:"VC395_1839";i:17;s:0:"";i:18;s:15:"View Structure ";}i:12;a:19:{i:0;i:12;i:1;s:11:"NC_012582.1";i:2;s:33:"Vibrio cholerae O395 chromosome I";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"2806990-2807127";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"2805933-2806926";i:10;s:1:"-";i:11;s:4:"tbpA";i:12;s:0:"";i:13;s:10:"VC395_2652";i:14;s:6:"Operon";i:15;s:7:"1309286";i:16;s:82:"VC395_2650;VC395_2651;VC395_2652(tbpA);VC395_2653;VC395_2654(ubiX);VC395_2655(mpl)";i:17;s:0:"";i:18;s:15:"View Structure ";}}
