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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
157400-157555
(+)
glmS
157746-159549 (+)
glmS
BAMEG_0189
Single gene
DOOR ID:
2550029
BAMEG_0189
(glmS)
View Structure
2
177033-177147
(-)
SAM
176134-176947 (-)
BAMEG_0207
BAMEG_0207
Operon
DOOR ID:
550602
BAMEG_0205,
BAMEG_0206,
BAMEG_0207
View Structure
3
185457-185562
(+)
SAM
185692-186616 (+)
BAMEG_0218
BAMEG_0218
Operon
DOOR ID:
550604
BAMEG_0218,
BAMEG_0219,
BAMEG_0220,
BAMEG_0221,
BAMEG_0222
View Structure
4
196953-197059
(-)
SAM
195179-196820 (-)
BAMEG_0228
BAMEG_0228
Single gene
DOOR ID:
2550047
BAMEG_0228
View Structure
5
260994-261095
(+)
purine
261251-262799 (+)
guaA
GMP synthase [glutamine-hydrolyzing] (GMP synthetase) (Glutamine amidotransferase)
BAMEG_0314
Single gene
DOOR ID:
2550082
BAMEG_0314
(guaA)
View Structure
6
262954-263055
(+)
purine
263183-264509 (+)
BAMEG_0316
BAMEG_0316
Single gene
DOOR ID:
2550083
BAMEG_0316
View Structure
7
295684-295785
(+)
purine
295894-296380 (+)
purE
BAMEG_0346
Operon
DOOR ID:
550622
BAMEG_0346
(purE)
,
BAMEG_0347
(purK)
,
BAMEG_0348
(purB)
,
BAMEG_0349
(purC)
,
BAMEG_0350
(purS)
,
BAMEG_0351
(purQ)
,
BAMEG_0352
(purL)
,
BAMEG_0353
(purF)
,
BAMEG_0354
(purM)
,
BAMEG_0355
(purN)
,
BAMEG_0356
(purH)
View Structure
8
320958-321064
(+)
SAM
321187-322207 (+)
BAMEG_0370
BAMEG_0370
Operon
DOOR ID:
550625
BAMEG_0370,
BAMEG_0371,
BAMEG_0372
View Structure
9
342609-342710
(-)
purine
341209-342406 (-)
BAMEG_0391
BAMEG_0391
Single gene
DOOR ID:
2550103
BAMEG_0391
View Structure
10
371371-371483
(-)
SAM
370651-371284 (-)
BAMEG_0423
BAMEG_0423
Single gene
DOOR ID:
2550120
BAMEG_0423
View Structure
11
394267-394376
(+)
TPP
394448-395255 (+)
thiM
Hydroxyethylthiazole kinase (0) (4-methyl-5-beta-hydroxyethylthiazole kinase) (TH kinase) (Thz kinase)
BAMEG_0442
Operon
DOOR ID:
550637
BAMEG_0442
(thiM)
,
BAMEG_0443
(thiE)
View Structure
12
397645-397729
(+)
c-di-GMP-I
397870-399610 (+)
BAMEG_0445
BAMEG_0445
single gene
DOOR ID:
2550133
BAMEG_0445
View Structure
13
399672-399774
(+)
TPP
399873-400194 (+)
BAMEG_0447
BAMEG_0447
Operon
DOOR ID:
550638
BAMEG_0447,
BAMEG_0448,
BAMEG_0449
View Structure
14
633262-633363
(+)
purine
633595-634321 (+)
BAMEG_0701
BAMEG_0701
Single gene
DOOR ID:
2550196
BAMEG_0701
View Structure
15
1101595-1101736
(-)
ydaO-yuaA
1101353-1101497 (-)
BAMEG_1214
BAMEG_1214
Single gene
DOOR ID:
2550433
BAMEG_1214
View Structure
16
1146951-1147049
(+)
SAM
1147151-1147409 (+)
BAMEG_1266
BAMEG_1266
Single gene
DOOR ID:
2550463
BAMEG_1266
View Structure
17
1285399-1285500
(+)
SAM
1285588-1286794 (+)
BAMEG_1406
BAMEG_1406
Single gene
DOOR ID:
2550532
BAMEG_1406
View Structure
18
1404792-1404984
(-)
lysine
1403212-1404679 (-)
lysP
BAMEG_1530
Single gene
DOOR ID:
2550603
BAMEG_1530
(lysP)
View Structure
19
1779497-1779612
(-)
SAM
1778808-1779357 (-)
BAMEG_1951
BAMEG_1951
Operon
DOOR ID:
550934
BAMEG_1949,
BAMEG_1950,
BAMEG_1951
View Structure
20
1805277-1805382
(-)
TPP
1804463-1805180 (-)
tenA
BAMEG_1983
Single gene
DOOR ID:
2550816
BAMEG_1983
(tenA)
View Structure
21
2017471-2017590
(+)
glycine
2017697-2019065 (+)
BAMEG_2219
BAMEG_2219
Single gene
DOOR ID:
2550951
BAMEG_2219
View Structure
22
2470847-2470993
(-)
ydaO-yuaA
2469605-2470703 (-)
BAMEG_2707
BAMEG_2707
Operon
DOOR ID:
551064
BAMEG_2706,
BAMEG_2707
View Structure
23
2542261-2542447
(+)
lysine
2542646-2543876 (+)
dapG1
BAMEG_2781
Single gene
DOOR ID:
2551234
BAMEG_2781
(dapG1)
View Structure
24
2696640-2696684
(-)
PreQ1
2696147-2696633 (-)
BAMEG_2965
BAMEG_2965
Single gene
DOOR ID:
2551303
BAMEG_2965
View Structure
25
2728516-2728679
(-)
ykoK
2727444-2728170 (-)
BAMEG_2986
BAMEG_2986
Single gene
DOOR ID:
2551311
BAMEG_2986
View Structure
26
2741407-2741508
(-)
purine
2740705-2741299 (-)
xpt
Xanthine phosphoribosyltransferase (XPRTase) (2)
BAMEG_3002
Operon
DOOR ID:
551114
BAMEG_3001
(pbuX)
,
BAMEG_3002
(xpt)
,
BAMEG_3003
View Structure
27
2816368-2816507
(-)
FMN
2815627-2816206 (-)
BAMEG_3091
BAMEG_3091
Single gene
DOOR ID:
2551349
BAMEG_3091
View Structure
28
2863616-2863721
(-)
SAM
2862203-2863520 (-)
BAMEG_3139
BAMEG_3139
Single gene
DOOR ID:
2551380
BAMEG_3139
View Structure
29
2876307-2876415
(-)
SAM
2876090-2876234 (-)
BAMEG_3153
BAMEG_3153
Single gene
DOOR ID:
2551383
BAMEG_3153
View Structure
30
2878028-2878209
(-)
lysine
2876530-2877847 (-)
lysA
BAMEG_3155
Single gene
DOOR ID:
2551384
BAMEG_3155
(lysA)
View Structure
31
2940258-2940301
(-)
PreQ1
2939501-2940164 (-)
BAMEG_3236
7-cyano-7-deazaguanine synthase (0) (7-cyano-7-carbaguanine synthase) (PreQ(0) synthase) (Queuosine biosynthesis protein QueC)
BAMEG_3236
Operon
DOOR ID:
551154
BAMEG_3233,
BAMEG_3234
(queE)
,
BAMEG_3235,
BAMEG_3236
View Structure
32
2969906-2970070
(+)
yybP-ykoY
2970161-2970956 (+)
BAMEG_3275
BAMEG_3275
Single gene
DOOR ID:
2551437
BAMEG_3275
View Structure
33
3383501-3383682
(+)
lysine
3383882-3385253 (+)
BAMEG_3712
BAMEG_3712
Operon
DOOR ID:
551241
BAMEG_3712,
BAMEG_3713
View Structure
34
3477391-3477536
(-)
ydaO-yuaA
3475422-3477090 (-)
kdpA
Potassium-transporting ATPase potassium-binding subunit (ATP phosphohydrolase [potassium-transporting] A chain) (Potassium-binding and translocating subunit A) (Potassium-translocating ATPase A chain)
BAMEG_3819
Operon
DOOR ID:
551265
BAMEG_3816
(kdpD)
,
BAMEG_3817
(kdpC)
,
BAMEG_3818
(kdpB)
,
BAMEG_3819
(kdpA)
View Structure
35
3478525-3478672
(-)
ydaO-yuaA
3478044-3478314 (-)
BAMEG_3823
BAMEG_3823
Operon
DOOR ID:
551266
BAMEG_3821,
BAMEG_3822,
BAMEG_3823
View Structure
36
3486569-3486672
(-)
TPP
3485788-3486484 (-)
BAMEG_3834
BAMEG_3834
Operon
DOOR ID:
551267
BAMEG_3825
(thiD1)
,
BAMEG_3826,
BAMEG_3827
(thiG)
,
BAMEG_3828
(thiS)
,
BAMEG_3829
(thiO)
,
BAMEG_3830
(tenI)
,
BAMEG_3831,
BAMEG_3832,
BAMEG_3833,
BAMEG_3834
View Structure
37
3486733-3486845
(-)
TPP
3485788-3486484 (-)
BAMEG_3834
BAMEG_3834
Operon
DOOR ID:
551267
BAMEG_3825
(thiD1)
,
BAMEG_3826,
BAMEG_3827
(thiG)
,
BAMEG_3828
(thiS)
,
BAMEG_3829
(thiO)
,
BAMEG_3830
(tenI)
,
BAMEG_3831,
BAMEG_3832,
BAMEG_3833,
BAMEG_3834
View Structure
38
3860639-3860827
(+)
cobalamin
3860954-3863243 (+)
metE
5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (4) (Cobalamin-independent methionine synthase) (Methionine synthase; vitamin-B12 independent isozyme)
BAMEG_4259
Single gene
DOOR ID:
2551882
BAMEG_4259
(metE)
View Structure
39
3892011-3892152
(-)
SAM
3890738-3891920 (-)
mtnK
Methylthioribose kinase (MTR kinase) (00)
BAMEG_4291
Operon
DOOR ID:
551341
BAMEG_4290
(mtnA)
,
BAMEG_4291
(mtnK)
View Structure
40
3894344-3894451
(+)
SAM
3894515-3895760 (+)
mtnW
2;3-diketo-5-methylthiopentyl-1-phosphate enolase (DK-MTP-1-P enolase) (RuBisCO-like protein) (RLP)
BAMEG_4296
Operon
DOOR ID:
551342
BAMEG_4296
(mtnW)
,
BAMEG_4297
(mtnX)
,
BAMEG_4298
(mtnB)
,
BAMEG_4299
View Structure
41
3955301-3955444
(+)
FMN
3955755-3956868 (+)
ribD
BAMEG_4371
Operon
DOOR ID:
551353
BAMEG_4371
(ribD)
,
BAMEG_4372
(ribE)
,
BAMEG_4373
(ribBA)
,
BAMEG_4375
(ribH)
View Structure
42
3964843-3964905
(-)
glutamine
3963374-3964103 (-)
bioD
ATP-dependent dethiobiotin synthetase BioD (DTB synthetase) (DTBS) (Dethiobiotin synthase)
BAMEG_4380
Operon
DOOR ID:
551354
BAMEG_4376
(bioB)
,
BAMEG_4377,
BAMEG_4378,
BAMEG_4379
(bioF)
,
BAMEG_4380
(bioD)
,
BAMEG_4381
(bioA)
View Structure
43
4075394-4075503
(-)
SAM
4073487-4075323 (-)
BAMEG_4513
BAMEG_4513
Operon
DOOR ID:
551375
BAMEG_4511
(murG2)
,
BAMEG_4512
(metH)
,
BAMEG_4513
View Structure
44
4075706-4075815
(+)
SAM
4075909-4077022 (+)
metI
BAMEG_4516
Operon
DOOR ID:
551376
BAMEG_4516
(metI)
,
BAMEG_4517
View Structure
45
4555920-4556041
(-)
SAM
4554550-4555750 (-)
metK
S-adenosylmethionine synthase (AdoMet synthase) (MAT) (Methionine adenosyltransferase)
BAMEG_5052
Single gene
DOOR ID:
2552220
BAMEG_5052
(metK)
View Structure
46
4591780-4591881
(+)
TPP
4591967-4592636 (+)
BAMEG_5101
BAMEG_5101
Single gene
DOOR ID:
2552245
BAMEG_5101
View Structure
47
4742319-4742426
(-)
SAM
4740994-4742020 (-)
BAMEG_5278
BAMEG_5278
Operon
DOOR ID:
551530
BAMEG_5275,
BAMEG_5276,
BAMEG_5277,
BAMEG_5278
View Structure
48
4826181-4826240
(+)
fluoride
4826264-4826699 (+)
BAMEG_5370
BAMEG_5370
Operon
DOOR ID:
551552
BAMEG_5370,
BAMEG_5371
View Structure
49
4955836-4955951
(-)
TPP
4953962-4955723 (-)
thiC
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
BAMEG_5511
Single gene
DOOR ID:
2552426
BAMEG_5511
(thiC)
View Structure
50
5142917-5143022
(-)
SAM
5141525-5142824 (-)
BAMEG_5700
BAMEG_5700
Operon
DOOR ID:
551615
BAMEG_5699
(metA)
,
BAMEG_5700
View Structure
Genome:
Bacillus anthracis str. CDC 684
(
NC_012581.1
);
Phylum:
Firmicutes
a:51:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_012581.1";i:2;s:32:"Bacillus anthracis str. CDC 684 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"157400-157555";i:6;s:1:"+";i:7;s:4:"glmS";i:8;s:0:"";i:9;s:13:"157746-159549";i:10;s:1:"+";i:11;s:4:"glmS";i:12;s:0:"";i:13;s:10:"BAMEG_0189";i:14;s:11:"Single gene";i:15;s:7:"2550029";i:16;s:16:"BAMEG_0189(glmS)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_012581.1";i:2;s:32:"Bacillus anthracis str. CDC 684 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"177033-177147";i:6;s:1:"-";i:7;s:3:"SAM";i:8;s:0:"";i:9;s:13:"176134-176947";i:10;s:1:"-";i:11;s:10:"BAMEG_0207";i:12;s:0:"";i:13;s:10:"BAMEG_0207";i:14;s:6:"Operon";i:15;s:6:"550602";i:16;s:32:"BAMEG_0205;BAMEG_0206;BAMEG_0207";i:17;s:0:"";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_012581.1";i:2;s:32:"Bacillus anthracis str. CDC 684 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"185457-185562";i:6;s:1:"+";i:7;s:3:"SAM";i:8;s:0:"";i:9;s:13:"185692-186616";i:10;s:1:"+";i:11;s:10:"BAMEG_0218";i:12;s:0:"";i:13;s:10:"BAMEG_0218";i:14;s:6:"Operon";i:15;s:6:"550604";i:16;s:54:"BAMEG_0218;BAMEG_0219;BAMEG_0220;BAMEG_0221;BAMEG_0222";i:17;s:0:"";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_012581.1";i:2;s:32:"Bacillus anthracis str. CDC 684 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"196953-197059";i:6;s:1:"-";i:7;s:3:"SAM";i:8;s:0:"";i:9;s:13:"195179-196820";i:10;s:1:"-";i:11;s:10:"BAMEG_0228";i:12;s:0:"";i:13;s:10:"BAMEG_0228";i:14;s:11:"Single gene";i:15;s:7:"2550047";i:16;s:10:"BAMEG_0228";i:17;s:0:"";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_012581.1";i:2;s:32:"Bacillus anthracis str. CDC 684 ";i:3;s:10:"Firmicutes";i:4;s:4:"1239";i:5;s:13:"260994-261095";i:6;s:1:"+";i:7;s:6:"purine";i:8;s:0:"";i:9;s:13:"261251-262799";i:10;s:1:"+";i:11;s:4:"guaA";i:12;s:83:"GMP synthase [glutamine-hydrolyzing] (GMP synthetase) (Glutamine amidotransferase)";i:13;s:10:"BAMEG_0314";i:14;s:11:"Single gene";i:15;s:7:"2550082";i:16;s:16:"BAMEG_0314(guaA)";i:17;s:79:"glutamine metabolic process [GO:0006541]; GMP biosynthetic process [GO:0006177]";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_012581.1";i:2;s:32:"Bacillus anthracis str. 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