About
Search
Advanced Search
Genomes
Predict
About us
S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
232051-232223
(-)
lysine
230391-231981 (-)
VCM66_A0209
VCM66_A0209
Single gene
DOOR ID:
2549551
VCM66_A0209
View Structure
2
729240-729346
(+)
c-di-GMP-I
729463-730921 (+)
VCM66_A0770
GlcNAc-binding protein A
VCM66_A0770
single gene
DOOR ID:
2549840
VCM66_A0770
View Structure
3
985517-985655
(-)
FMN
984745-985402 (-)
ribB
3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)
VCM66_A1018
Single gene
DOOR ID:
2549974
VCM66_A1018
(ribB)
View Structure
Genome:
Vibrio cholerae M66-2 chromosome II
(
NC_012580.1
);
Phylum:
Gammaproteobacteria
a:4:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_012580.1";i:2;s:35:"Vibrio cholerae M66-2 chromosome II";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:13:"232051-232223";i:6;s:1:"-";i:7;s:6:"lysine";i:8;s:0:"";i:9;s:13:"230391-231981";i:10;s:1:"-";i:11;s:11:"VCM66_A0209";i:12;s:0:"";i:13;s:11:"VCM66_A0209";i:14;s:11:"Single gene";i:15;s:7:"2549551";i:16;s:11:"VCM66_A0209";i:17;s:0:"";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_012580.1";i:2;s:35:"Vibrio cholerae M66-2 chromosome II";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:13:"729240-729346";i:6;s:1:"+";i:7;s:10:"c-di-GMP-I";i:8;s:0:"";i:9;s:13:"729463-730921";i:10;s:1:"+";i:11;s:11:"VCM66_A0770";i:12;s:24:"GlcNAc-binding protein A";i:13;s:11:"VCM66_A0770";i:14;s:11:"single gene";i:15;s:7:"2549840";i:16;s:11:"VCM66_A0770";i:17;s:0:"";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_012580.1";i:2;s:35:"Vibrio cholerae M66-2 chromosome II";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:13:"985517-985655";i:6;s:1:"-";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:13:"984745-985402";i:10;s:1:"-";i:11;s:4:"ribB";i:12;s:65:"3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)";i:13;s:11:"VCM66_A1018";i:14;s:11:"Single gene";i:15;s:7:"2549974";i:16;s:17:"VCM66_A1018(ribB)";i:17;s:44:"riboflavin biosynthetic process [GO:0009231]";i:18;s:15:"View Structure ";}}
