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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
20081-20190
(+)
yybP-ykoY
20234-20837 (+)
VCM66_0022
VCM66_0022
Single gene
DOOR ID:
2548333
VCM66_0022
View Structure
2
59754-59852
(+)
TPP
59952-61890 (+)
thiC
Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)
VCM66_0061
Operon
DOOR ID:
549837
VCM66_0061
(thiC)
,
VCM66_0062
(thiE)
,
VCM66_0063
(thiF)
,
VCM66_0064
(thiS)
,
VCM66_0065
(thiG)
,
VCM66_0066
(thiH)
View Structure
3
145094-145297
(+)
cobalamin
145340-147176 (+)
btuB
Vitamin B12 transporter BtuB (Cobalamin receptor) (Outer membrane cobalamin translocator)
VCM66_0155
Single gene
DOOR ID:
2548385
VCM66_0155
(btuB)
View Structure
4
398983-399160
(-)
lysine
397516-398956 (-)
lysC
Aspartokinase
VCM66_0376
Single gene
DOOR ID:
2548459
VCM66_0376
(lysC)
View Structure
5
1050455-1050594
(+)
MOCO
1051631-1052144 (+)
moaB
Molybdenum cofactor biosynthesis protein B
VCM66_0980
Operon
DOOR ID:
550016
VCM66_0979
(moaA)
,
VCM66_0980
(moaB)
,
VCM66_0981
(moaC)
,
VCM66_0982
(moaD)
,
VCM66_0983
(moaE)
View Structure
6
1156408-1156590
(+)
lysine
1156705-1158307 (+)
VCM66_1087
Putative membrane protein
VCM66_1087
Single gene
DOOR ID:
2548737
VCM66_1087
View Structure
7
1332349-1332459
(+)
TPP
1332518-1333367 (+)
thiD
Phosphomethylpyrimidine kinase
VCM66_1251
Single gene
DOOR ID:
2548815
VCM66_1251
(thiD)
View Structure
8
1442200-1442247
(+)
mini-ykkC
1442263-1442578 (+)
sugE
VCM66_1348
Single gene
DOOR ID:
2548861
VCM66_1348
(sugE)
View Structure
9
1477868-1477967
(-)
glycine
1476398-1477775 (-)
VCM66_1377
Sodium/alanine symporter
VCM66_1377
Single gene
DOOR ID:
2548872
VCM66_1377
View Structure
10
1733832-1734001
(+)
ykoK
1734100-1735456 (+)
mgtE-1
Magnesium transporter MgtE
VCM66_1594
Single gene
DOOR ID:
2548945
VCM66_1594
(mgtE-1)
View Structure
11
1807824-1807910
(+)
c-di-GMP-I
1808023-1808611 (+)
VCM66_1662
Uncharacterized protein
VCM66_1662
single gene
DOOR ID:
2548971
VCM66_1662
View Structure
12
2659438-2659575
(-)
TPP
2658381-2659374 (-)
tbpA
Thiamin ABC transporter; periplasmic thiamin-binding protein
VCM66_2460
Operon
DOOR ID:
550304
VCM66_2458,
VCM66_2459
(thiP)
,
VCM66_2460
(tbpA)
,
VCM66_2461,
VCM66_2462
(ubiX)
,
VCM66_2463
(mpl)
View Structure
Genome:
Vibrio cholerae M66-2 chromosome I
(
NC_012578.1
);
Phylum:
Gammaproteobacteria
a:13:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_012578.1";i:2;s:34:"Vibrio cholerae M66-2 chromosome I";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:11:"20081-20190";i:6;s:1:"+";i:7;s:9:"yybP-ykoY";i:8;s:0:"";i:9;s:11:"20234-20837";i:10;s:1:"+";i:11;s:10:"VCM66_0022";i:12;s:0:"";i:13;s:10:"VCM66_0022";i:14;s:11:"Single gene";i:15;s:7:"2548333";i:16;s:10:"VCM66_0022";i:17;s:0:"";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_012578.1";i:2;s:34:"Vibrio cholerae M66-2 chromosome I";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:11:"59754-59852";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:11:"59952-61890";i:10;s:1:"+";i:11;s:4:"thiC";i:12;s:176:"Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)";i:13;s:10:"VCM66_0061";i:14;s:6:"Operon";i:15;s:6:"549837";i:16;s:101:"VCM66_0061(thiC);VCM66_0062(thiE);VCM66_0063(thiF);VCM66_0064(thiS);VCM66_0065(thiG);VCM66_0066(thiH)";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_012578.1";i:2;s:34:"Vibrio cholerae M66-2 chromosome I";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:13:"145094-145297";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:13:"145340-147176";i:10;s:1:"+";i:11;s:4:"btuB";i:12;s:89:"Vitamin B12 transporter BtuB (Cobalamin receptor) (Outer membrane cobalamin translocator)";i:13;s:10:"VCM66_0155";i:14;s:11:"Single gene";i:15;s:7:"2548385";i:16;s:16:"VCM66_0155(btuB)";i:17;s:26:"ion transport [GO:0006811]";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_012578.1";i:2;s:34:"Vibrio cholerae M66-2 chromosome I";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:13:"398983-399160";i:6;s:1:"-";i:7;s:6:"lysine";i:8;s:0:"";i:9;s:13:"397516-398956";i:10;s:1:"-";i:11;s:4:"lysC";i:12;s:14:"Aspartokinase ";i:13;s:10:"VCM66_0376";i:14;s:11:"Single gene";i:15;s:7:"2548459";i:16;s:16:"VCM66_0376(lysC)";i:17;s:105:"lysine biosynthetic process via diaminopimelate [GO:0009089]; threonine biosynthetic process [GO:0009088]";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_012578.1";i:2;s:34:"Vibrio cholerae M66-2 chromosome I";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"1050455-1050594";i:6;s:1:"+";i:7;s:4:"MOCO";i:8;s:0:"";i:9;s:15:"1051631-1052144";i:10;s:1:"+";i:11;s:4:"moaB";i:12;s:42:"Molybdenum cofactor biosynthesis protein B";i:13;s:10:"VCM66_0980";i:14;s:6:"Operon";i:15;s:6:"550016";i:16;s:84:"VCM66_0979(moaA);VCM66_0980(moaB);VCM66_0981(moaC);VCM66_0982(moaD);VCM66_0983(moaE)";i:17;s:59:"Mo-molybdopterin cofactor biosynthetic process [GO:0006777]";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_012578.1";i:2;s:34:"Vibrio cholerae M66-2 chromosome I";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"1156408-1156590";i:6;s:1:"+";i:7;s:6:"lysine";i:8;s:0:"";i:9;s:15:"1156705-1158307";i:10;s:1:"+";i:11;s:10:"VCM66_1087";i:12;s:25:"Putative membrane protein";i:13;s:10:"VCM66_1087";i:14;s:11:"Single gene";i:15;s:7:"2548737";i:16;s:10:"VCM66_1087";i:17;s:0:"";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_012578.1";i:2;s:34:"Vibrio cholerae M66-2 chromosome I";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"1332349-1332459";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"1332518-1333367";i:10;s:1:"+";i:11;s:4:"thiD";i:12;s:31:"Phosphomethylpyrimidine kinase ";i:13;s:10:"VCM66_1251";i:14;s:11:"Single gene";i:15;s:7:"2548815";i:16;s:16:"VCM66_1251(thiD)";i:17;s:42:"thiamine biosynthetic process [GO:0009228]";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_012578.1";i:2;s:34:"Vibrio cholerae M66-2 chromosome I";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"1442200-1442247";i:6;s:1:"+";i:7;s:9:"mini-ykkC";i:8;s:0:"";i:9;s:15:"1442263-1442578";i:10;s:1:"+";i:11;s:4:"sugE";i:12;s:0:"";i:13;s:10:"VCM66_1348";i:14;s:11:"Single gene";i:15;s:7:"2548861";i:16;s:16:"VCM66_1348(sugE)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_012578.1";i:2;s:34:"Vibrio cholerae M66-2 chromosome I";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"1477868-1477967";i:6;s:1:"-";i:7;s:7:"glycine";i:8;s:0:"";i:9;s:15:"1476398-1477775";i:10;s:1:"-";i:11;s:10:"VCM66_1377";i:12;s:24:"Sodium/alanine symporter";i:13;s:10:"VCM66_1377";i:14;s:11:"Single gene";i:15;s:7:"2548872";i:16;s:10:"VCM66_1377";i:17;s:0:"";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_012578.1";i:2;s:34:"Vibrio cholerae M66-2 chromosome I";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"1733832-1734001";i:6;s:1:"+";i:7;s:4:"ykoK";i:8;s:0:"";i:9;s:15:"1734100-1735456";i:10;s:1:"+";i:11;s:6:"mgtE-1";i:12;s:26:"Magnesium transporter MgtE";i:13;s:10:"VCM66_1594";i:14;s:11:"Single gene";i:15;s:7:"2548945";i:16;s:18:"VCM66_1594(mgtE-1)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:11;a:19:{i:0;i:11;i:1;s:11:"NC_012578.1";i:2;s:34:"Vibrio cholerae M66-2 chromosome I";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"1807824-1807910";i:6;s:1:"+";i:7;s:10:"c-di-GMP-I";i:8;s:0:"";i:9;s:15:"1808023-1808611";i:10;s:1:"+";i:11;s:10:"VCM66_1662";i:12;s:23:"Uncharacterized protein";i:13;s:10:"VCM66_1662";i:14;s:11:"single gene";i:15;s:7:"2548971";i:16;s:10:"VCM66_1662";i:17;s:0:"";i:18;s:15:"View Structure ";}i:12;a:19:{i:0;i:12;i:1;s:11:"NC_012578.1";i:2;s:34:"Vibrio cholerae M66-2 chromosome I";i:3;s:19:"Gammaproteobacteria";i:4;s:4:"1236";i:5;s:15:"2659438-2659575";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"2658381-2659374";i:10;s:1:"-";i:11;s:4:"tbpA";i:12;s:60:"Thiamin ABC transporter; periplasmic thiamin-binding protein";i:13;s:10:"VCM66_2460";i:14;s:6:"Operon";i:15;s:6:"550304";i:16;s:88:"VCM66_2458;VCM66_2459(thiP);VCM66_2460(tbpA);VCM66_2461;VCM66_2462(ubiX);VCM66_2463(mpl)";i:17;s:31:"thiamine transport [GO:0015888]";i:18;s:15:"View Structure ";}}
