Genome: Vibrio cholerae M66-2 chromosome I (NC_012578.1); Phylum: Gammaproteobacteria
S.No.Riboswitch Location and StrandRiboswitch classDownstream gene location and StrandDownstream gene name/gene product descriptionLocus_tag of downstream geneSingle gene/within operon (According to DOOR database)Operon details (List of genes within operon and their Locus_tag)Predicted Structure
1 20081-20190 (+)yybP-ykoY20234-20837 (+)VCM66_0022

VCM66_0022Single gene

DOOR ID: 2548333
VCM66_0022 View Structure
2 59754-59852 (+)TPP59952-61890 (+)thiC

Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)

DOOR ID: 549837
VCM66_0061 (thiC),
VCM66_0062 (thiE),
VCM66_0063 (thiF),
VCM66_0064 (thiS),
VCM66_0065 (thiG),
VCM66_0066 (thiH)
View Structure
3 145094-145297 (+)cobalamin145340-147176 (+)btuB

Vitamin B12 transporter BtuB (Cobalamin receptor) (Outer membrane cobalamin translocator)
VCM66_0155Single gene

DOOR ID: 2548385
VCM66_0155 (btuB) View Structure
4 398983-399160 (-)lysine397516-398956 (-)lysC

VCM66_0376Single gene

DOOR ID: 2548459
VCM66_0376 (lysC) View Structure
5 1050455-1050594 (+)MOCO1051631-1052144 (+)moaB

Molybdenum cofactor biosynthesis protein B

DOOR ID: 550016
VCM66_0979 (moaA),
VCM66_0980 (moaB),
VCM66_0981 (moaC),
VCM66_0982 (moaD),
VCM66_0983 (moaE)
View Structure
6 1156408-1156590 (+)lysine1156705-1158307 (+)VCM66_1087

Putative membrane protein
VCM66_1087Single gene

DOOR ID: 2548737
VCM66_1087 View Structure
7 1332349-1332459 (+)TPP1332518-1333367 (+)thiD

Phosphomethylpyrimidine kinase
VCM66_1251Single gene

DOOR ID: 2548815
VCM66_1251 (thiD) View Structure
8 1442200-1442247 (+)mini-ykkC1442263-1442578 (+)sugE

VCM66_1348Single gene

DOOR ID: 2548861
VCM66_1348 (sugE) View Structure
9 1477868-1477967 (-)glycine1476398-1477775 (-)VCM66_1377

Sodium/alanine symporter
VCM66_1377Single gene

DOOR ID: 2548872
VCM66_1377 View Structure
10 1733832-1734001 (+)ykoK1734100-1735456 (+)mgtE-1

Magnesium transporter MgtE
VCM66_1594Single gene

DOOR ID: 2548945
VCM66_1594 (mgtE-1) View Structure
11 1807824-1807910 (+)c-di-GMP-I1808023-1808611 (+)VCM66_1662

Uncharacterized protein
VCM66_1662single gene

DOOR ID: 2548971
VCM66_1662 View Structure
12 2659438-2659575 (-)TPP2658381-2659374 (-)tbpA

Thiamin ABC transporter; periplasmic thiamin-binding protein

DOOR ID: 550304
VCM66_2459 (thiP),
VCM66_2460 (tbpA),
VCM66_2462 (ubiX),
VCM66_2463 (mpl)
View Structure