Genome: Clostridium botulinum A2 str. Kyoto (NC_012563.1); Phylum: Firmicutes
S.No.Riboswitch Location and StrandRiboswitch classDownstream gene location and StrandDownstream gene name/gene product descriptionLocus_tag of downstream geneSingle gene/within operon (According to DOOR database)Operon details (List of genes within operon and their Locus_tag)Predicted Structure
1 195051-195152 (+)SAM195231-196407 (+)metK

S-adenosylmethionine synthase (AdoMet synthase) (MAT) (Methionine adenosyltransferase)
CLM_0216Single gene

DOOR ID: 2546617
CLM_0216 (metK) View Structure
2 209561-209677 (+)FMN209772-210366 (+)CLM_0226

Riboflavin transporter
CLM_0226Single gene

DOOR ID: 2546623
CLM_0226 View Structure
3 235783-235948 (+)ykoK236151-237417 (+)CLM_0253

PRC-barrel domain/MgtE domain/CBS domain protein
CLM_0253Single gene

DOOR ID: 2546639
CLM_0253 View Structure
4 291218-291393 (+)lysine291522-292986 (+)CLM_0302

Putative lysine-specific permease
CLM_0302Single gene

DOOR ID: 2546666
CLM_0302 View Structure
5 404633-404734 (+)purine404910-406212 (+)CLM_0384

Xanthine/uracil permease family protein

DOOR ID: 549150
CLM_0385 (xpt)
View Structure
6 542035-542209 (+)lysine542370-544137 (+)CLM_0501

Na+/H+ antiporter family protein
CLM_0501Single gene

DOOR ID: 2546763
CLM_0501 View Structure
7 581142-581245 (-)TPP580036-580837 (-)thiD

Phosphomethylpyrimidine kinase
CLM_0533Single gene

DOOR ID: 2546778
CLM_0533 (thiD) View Structure
8 713933-714038 (+)TPP714095-714779 (+)CLM_0658

Probable proton-coupled thiamine transporter YuaJ
CLM_0658Single gene

DOOR ID: 2546845
CLM_0658 View Structure
9 1000105-1000205 (+)THF1000300-1001080 (+)CLM_0940

Putative membrane protein
CLM_0940Single gene

DOOR ID: 2546996
CLM_0940 View Structure
10 1110711-1110892 (+)cobalamin1111034-1112516 (+)cobQ

Cobyric acid synthase

DOOR ID: 549254
CLM_1061 (cobQ),
CLM_1062 (cobD)
View Structure
11 1295389-1295491 (+)SAM1295595-1296552 (+)CLM_1243

Methionine import ATP-binding protein MetN

DOOR ID: 549288
View Structure
12 1469402-1469471 (+)glycine1469561-1469939 (+)grdX

GrdX protein
CLM_1414Single gene

DOOR ID: 2547260
CLM_1414 (grdX) View Structure
13 1553819-1553942 (-)ydaO-yuaA1553034-1553814 (-)CLM_1498

Putative cell wall hydrolase
CLM_1498Single gene

DOOR ID: 2547297
CLM_1498 View Structure
14 1901042-1901145 (+)SAM1901267-1902155 (+)metF

Methylenetetrahydrofolate reductase (0)
CLM_1863Single gene

DOOR ID: 2547452
CLM_1863 (metF) View Structure
15 2080031-2080089 (-)fluoride2078786-2079974 (-)CLM_2010

Transporter; CPA2 family
CLM_2010Single gene

DOOR ID: 2547532
CLM_2010 View Structure
16 2151024-2151129 (-)SAM2149618-2150899 (-)CLM_2092

O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase family protein

DOOR ID: 549432
CLM_2090 (metA),
CLM_2091 (hom),
View Structure
17 2290726-2290827 (-)purine2289594-2290659 (-)CLM_2223

Xanthine/uracil permease family protein

DOOR ID: 549462
View Structure
18 2465787-2465886 (-)purine2464317-2465661 (-)CLM_2388

Xanthine/uracil permease family protein

DOOR ID: 549497
View Structure
19 2541657-2541763 (-)TPP2541532-2541634 (-)CLM_2462

CLM_2462Single gene

DOOR ID: 2547714
CLM_2462 View Structure
20 3213745-3213850 (-)ykkC-yxkD3213228-3213666 (-)CLM_3193

MutT/NUDIX family protein
CLM_3193Single gene

DOOR ID: 2547963
CLM_3193 View Structure
21 3285035-3285153 (-)FMN3283713-3284811 (-)ribD

Riboflavin biosynthesis protein RibD [Includes: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (DRAP deaminase) (93) (HTP reductase)]

DOOR ID: 549647
CLM_3261 (ribE),
CLM_3262 (ribD)
View Structure
22 3291138-3291299 (-)ykoK3288123-3290769 (-)mgtA

Magnesium-importing ATPase
CLM_3266Single gene

DOOR ID: 2547996
CLM_3266 (mgtA) View Structure
23 3300090-3300191 (-)purine3299519-3299999 (-)purE

N5-carboxyaminoimidazole ribonucleotide mutase (N5-CAIR mutase) (8) (5-(carboxyamino)imidazole ribonucleotide mutase)

DOOR ID: 549648
CLM_3271 (purN),
CLM_3272 (purM),
CLM_3273 (purF),
CLM_3274 (purC),
CLM_3275 (purE)
View Structure
24 3327778-3327877 (-)purine3326249-3327692 (-)CLM_3297

Xanthine/uracil permease family protein
CLM_3297Single gene

DOOR ID: 2548006
CLM_3297 View Structure
25 3329981-3330070 (-)glycine3328211-3329564 (-)CLM_3299

Sodium:alanine symporter family protein
CLM_3299Single gene

DOOR ID: 2548007
CLM_3299 View Structure
26 3343007-3343106 (-)TPP3341533-3342910 (-)purF

Amidophosphoribosyltransferase (ATase) (4) (Glutamine phosphoribosylpyrophosphate amidotransferase) (GPATase)
CLM_3308Single gene

DOOR ID: 2548012
CLM_3308 (purF) View Structure
27 3658759-3658818 (-)fluoride3658336-3658489 (-)CLM_3619


DOOR ID: 549715
View Structure
28 3668517-3668607 (-)ZMP-ZTP3665969-3668198 (-)pfl

Formate acetyltransferase 1 (4)
CLM_3627Single gene

DOOR ID: 2548121
CLM_3627 (pfl) View Structure
29 3748942-3749039 (-)purine3747399-3748854 (-)guaB

Inosine-5'-monophosphate dehydrogenase (IMP dehydrogenase) (IMPD) (IMPDH) (05)

DOOR ID: 549731
CLM_3728 (guaA),
CLM_3729 (guaB)
View Structure
30 3817190-3817358 (-)lysine3815824-3817027 (-)lysC


DOOR ID: 549739
CLM_3780 (lysA),
CLM_3781 (lysC)
View Structure
31 3910705-3910815 (-)SAM3909242-3910568 (-)CLM_3865

Na+/H+ antiporter family protein
CLM_3865Single gene

DOOR ID: 2548219
CLM_3865 View Structure
32 3920603-3920783 (-)glmS3918733-3920560 (-)glmS

Glutamine--fructose-6-phosphate aminotransferase [isomerizing] (6) (D-fructose-6-phosphate amidotransferase) (GFAT) (Glucosamine-6-phosphate synthase) (Hexosephosphate aminotransferase) (L-glutamine--D-fructose-6-phosphate amidotransferase)
CLM_3875Single gene

DOOR ID: 2548226
CLM_3875 (glmS) View Structure
33 3940455-3940581 (+)ydaO-yuaA3941505-3942369 (-)CLM_3900

Oxidoreductase; pyridine nucleotide-disulphide family

DOOR ID: 549765
CLM_3900 View Structure