Genome: Rhodococcus opacus B4 (NC_012522.1); Phylum: Actinobacteria
S.No.Riboswitch Location and StrandRiboswitch classDownstream gene location and StrandDownstream gene name/gene product descriptionLocus_tag of downstream geneSingle gene/within operon (According to DOOR database)Operon details (List of genes within operon and their Locus_tag)Predicted Structure
1 25034-25118 (-)fluoride24520-25015 (-)ROP_00290

Putative fluoride ion transporter CrcB		ROP_00290Operon

DOOR ID: 545202		ROP_00270,
ROP_00280,
ROP_00290		 View Structure
2 312341-312413 (-)cobalamin308659-312262 (-)cobN

Cobaltochelatase CobN subunit 		ROP_02910Operon

DOOR ID: 545246		ROP_02900,
ROP_02910 (cobN)		 View Structure
3 664674-664791 (-)glycine661645-664498 (-)gcvP

Glycine dehydrogenase (decarboxylating) (Glycine cleavage system P-protein) (Glycine decarboxylase) (Glycine dehydrogenase (aminomethyl-transferring))		ROP_06370Single gene

DOOR ID: 2539490		ROP_06370 (gcvP) View Structure
4 696408-696599 (-)ydaO-yuaA695322-696330 (-)ROP_06720

ROP_06720Operon

DOOR ID: 545315		ROP_06670 (recN),
ROP_06680 (ppnK),
ROP_06690 (tlyA),
ROP_06700,
ROP_06710,
ROP_06720		 View Structure
5 895495-895659 (-)ydaO-yuaA894934-895480 (-)ROP_08530

NlpC/P60 family protein		ROP_08530Single gene

DOOR ID: 2539554		ROP_08530 View Structure
6 1241793-1241983 (-)ydaO-yuaA1240045-1241665 (+)ROP_11770

Putative CdaR family transcriptional regulator		ROP_11770Single gene

DOOR ID: 2539639		ROP_11770 View Structure
7 1374371-1374466 (+)TPP1375178-1376207 (+)ROP_13020

ROP_13020Operon

DOOR ID: 545457		ROP_13010,
ROP_13020,
ROP_13030,
ROP_13040		 View Structure
8 2011022-2011130 (+)TPP2012779-2013625 (+)thiD

Phosphomethylpyrimidine kinase 		ROP_18980Operon

DOOR ID: 545588		ROP_18970 (thiC),
ROP_18980 (thiD)		 View Structure
9 2020065-2020179 (-)TPP2018773-2018998 (-)thiS

Putative thiamine biosynthesis protein ThiS		ROP_19040Operon

DOOR ID: 545589		ROP_19010,
ROP_19020,
ROP_19030 (thiG),
ROP_19040 (thiS),
ROP_19050 (thiO)		 View Structure
10 2077435-2077528 (-)SAM2075559-2077203 (-)ROP_19380

Putative ABC transporter substrate-binding protein		ROP_19380Operon

DOOR ID: 545594		ROP_19210,
ROP_19220,
ROP_19230,
ROP_19240,
ROP_19250,
ROP_19260,
ROP_19270,
ROP_19280,
ROP_19290,
ROP_19300,
ROP_19310,
ROP_19320,
ROP_19330,
ROP_19340,
ROP_19350,
ROP_19360,
ROP_19370,
ROP_19380		 View Structure
11 2084670-2084766 (-)SAM2083449-2084442 (-)ROP_19460

Putative ABC transporter permease protein		ROP_19460Operon

DOOR ID: 545595		ROP_19390,
ROP_19400,
ROP_19410,
ROP_19420,
ROP_19430,
ROP_19440,
ROP_19450,
ROP_19460		 View Structure
12 2849125-2849225 (-)glycine2848308-2849037 (-)ROP_26480

Hypothetical membrane protein		ROP_26480Operon

DOOR ID: 545742		ROP_26470,
ROP_26480		 View Structure
13 2849229-2849320 (-)glycine2848308-2849037 (-)ROP_26480

Hypothetical membrane protein		ROP_26480Operon

DOOR ID: 545742		ROP_26470,
ROP_26480		 View Structure
14 2853534-2853625 (+)glycine2853789-2856717 (+)gcvP

Glycine dehydrogenase (decarboxylating) (Glycine cleavage system P-protein) (Glycine decarboxylase) (Glycine dehydrogenase (aminomethyl-transferring))		ROP_26540Operon

DOOR ID: 545745		ROP_26540 (gcvP),
ROP_26550 (gcvT),
ROP_26560 (gcvH),
ROP_26570 (glyA),
ROP_26580 (sdaA)		 View Structure
15 3271365-3271560 (+)cobalamin3271695-3273957 (+)metE

5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (4) (Cobalamin-independent methionine synthase) (Methionine synthase; vitamin-B12 independent isozyme)		ROP_30380Single gene

DOOR ID: 2540229		ROP_30380 (metE) View Structure
16 3280619-3280763 (-)cobalamin3279535-3280576 (-)ROP_30440

Putative ABC transporter substrate-binding protein		ROP_30440Operon

DOOR ID: 545823		ROP_30420,
ROP_30430,
ROP_30440		 View Structure
17 4601033-4601223 (+)ydaO-yuaA4601475-4602372 (+)ROP_42670

Putative ABC transporter substrate-binding protein		ROP_42670Operon

DOOR ID: 546090		ROP_42670,
ROP_42680,
ROP_42690,
ROP_42700		 View Structure
18 4638172-4638286 (+)SAM-IV4638337-4639633 (+)ROP_43000

Putative cysteine desulfurase 		ROP_43000Single gene

DOOR ID: 2540691		ROP_43000 View Structure
19 4690443-4690576 (-)cobalamin4690225-4690420 (-)ROP_43510

Hypothetical membrane protein		ROP_43510Operon

DOOR ID: 546106		ROP_43500,
ROP_43510		 View Structure
20 5208066-5208127 (-)ykkC-III5207740-5208055 (-)ROP_48320

ROP_48320operon

DOOR ID: 546220		ROP_48310,
ROP_48320		 View Structure
21 5373295-5373399 (+)TPP5373439-5374213 (+)fabG

Putative oxidoreductase		ROP_49750Operon

DOOR ID: 546258		ROP_49750 (fabG),
ROP_49760		 View Structure
22 5435990-5436203 (-)ydaO-yuaA5435399-5435981 (-)rpf

Resuscitation-promoting factor		ROP_50280Single gene

DOOR ID: 2540896		ROP_50280 (rpf) View Structure
23 6886302-6886444 (+)cobalamin6886513-6887536 (+)ROP_62820

Putative ABC transporter substrate-binding protein		ROP_62820Operon

DOOR ID: 546538		ROP_62820,
ROP_62830,
ROP_62840,
ROP_62850		 View Structure
24 6901681-6901802 (-)SAM-IV6900278-6901562 (-)metY

O-acetylhomoserine (Thiol)-lyase (9)		ROP_62960Operon

DOOR ID: 546541		ROP_62950 (metX),
ROP_62960 (metY)		 View Structure