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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
436690-436793
(+)
TPP
439039-440029 (-)
GAU_0388
GAU_0388
Single gene
DOOR ID:
2533126
GAU_0388
View Structure
2
571326-571536
(-)
cobalamin
570164-571130 (-)
btuF
Putative vitamin B12 transport protein BtuF
GAU_0497
Operon
DOOR ID:
541820
GAU_0495
(btuC)
,
GAU_0496
(btuD)
,
GAU_0497
(btuF)
View Structure
3
2076856-2077069
(-)
cobalamin
2073873-2076747 (-)
nrdA
Ribonucleoside-diphosphate reductase
GAU_1749
Operon
DOOR ID:
542081
GAU_1748
(nrdB)
,
GAU_1749
(nrdA)
View Structure
4
2608835-2608910
(+)
sam-alpha
2608975-2610355 (+)
cysD
O-acetylhomoserine (Thiol)-lyase (9)
GAU_2222
Operon
DOOR ID:
542179
GAU_2222
(cysD)
,
GAU_2223
(metX/hom)
View Structure
5
4358699-4358796
(-)
TPP
4357816-4358650 (-)
thiM
Hydroxyethylthiazole kinase (0) (4-methyl-5-beta-hydroxyethylthiazole kinase) (TH kinase) (Thz kinase)
GAU_3710
Operon
DOOR ID:
542492
GAU_3707,
GAU_3708,
GAU_3709
(thiE/thiD)
,
GAU_3710
(thiM)
View Structure
Genome:
Gemmatimonas aurantiaca T-27
(
NC_012489.1
);
Phylum:
Gemmatimonadetes
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