Genome: Bacillus cereus 03BB102 (NC_012472.1); Phylum: Firmicutes
S.No.Riboswitch Location and StrandRiboswitch classDownstream gene location and StrandDownstream gene name/gene product descriptionLocus_tag of downstream geneSingle gene/within operon (According to DOOR database)Operon details (List of genes within operon and their Locus_tag)Predicted Structure
1 163115-163270 (+)glmS163461-165264 (+)glmS

Glutamine--fructose-6-phosphate aminotransferase [isomerizing] (6) (D-fructose-6-phosphate amidotransferase) (GFAT) (Glucosamine-6-phosphate synthase) (Hexosephosphate aminotransferase) (L-glutamine--D-fructose-6-phosphate amidotransferase)		BCA_0201Single gene

DOOR ID: 2527710		BCA_0201 (glmS) View Structure
2 182675-182789 (-)SAM181775-182588 (-)BCA_0217

Lipoprotein		BCA_0217Operon

DOOR ID: 539929		BCA_0215,
BCA_0216,
BCA_0217		 View Structure
3 191100-191205 (+)SAM191341-192259 (+)BCA_0229

Oligopeptide ABC transporter; permease protein		BCA_0229Operon

DOOR ID: 539931		BCA_0229,
BCA_0230,
BCA_0231,
BCA_0232,
BCA_0233		 View Structure
4 204098-204204 (-)SAM202324-203965 (-)BCA_0240

Putative oligopeptide ABC transporter; oligopeptide-binding protein		BCA_0240Single gene

DOOR ID: 2527729		BCA_0240 View Structure
5 271987-272088 (+)purine272244-273792 (+)guaA

GMP synthase [glutamine-hydrolyzing] (GMP synthetase) (Glutamine amidotransferase)		BCA_0324Single gene

DOOR ID: 2527765		BCA_0324 (guaA) View Structure
6 273947-274048 (+)purine274176-275502 (+)BCA_0326

Xanthine/uracil permease family protein		BCA_0326Single gene

DOOR ID: 2527766		BCA_0326 View Structure
7 315132-315233 (+)purine315343-315829 (+)purE

N5-carboxyaminoimidazole ribonucleotide mutase (N5-CAIR mutase) (8) (5-(carboxyamino)imidazole ribonucleotide mutase)		BCA_0362Operon

DOOR ID: 539947		BCA_0362 (purE),
BCA_0363 (purK),
BCA_0364 (purB),
BCA_0365 (purC),
BCA_0366 (purS),
BCA_0367 (purQ),
BCA_0368 (purL),
BCA_0369 (purF),
BCA_0370 (purM),
BCA_0371 (purN),
BCA_0372 (purH),
BCA_0373 (purD)		 View Structure
8 340415-340521 (+)SAM340644-341664 (+)BCA_0386

Methionine import ATP-binding protein MetN 		BCA_0386Operon

DOOR ID: 539950		BCA_0386,
BCA_0387,
BCA_0388		 View Structure
9 362082-362183 (-)purine360682-361879 (-)BCA_0405

Nucleoside transporter; NupC family		BCA_0405Single gene

DOOR ID: 2527785		BCA_0405 View Structure
10 392195-392307 (-)SAM391475-392108 (-)BCA_0436

Putative cyclase		BCA_0436Single gene

DOOR ID: 2527802		BCA_0436 View Structure
11 413317-413426 (+)TPP413498-414305 (+)thiM

Hydroxyethylthiazole kinase (0) (4-methyl-5-beta-hydroxyethylthiazole kinase) (TH kinase) (Thz kinase)		BCA_0454Operon

DOOR ID: 539960		BCA_0454 (thiM),
BCA_0455 (thiE)		 View Structure
12 416694-416778 (+)c-di-GMP-I416919-418659 (+)BCA_0457

Methyl-accepting chemotaxis protein		BCA_0457single gene

DOOR ID: 2527816		BCA_0457 View Structure
13 418721-418823 (+)TPP418922-419243 (+)BCA_0459

BCA_0459Operon

DOOR ID: 539961		BCA_0459,
BCA_0460,
BCA_0461,
BCA_0462		 View Structure
14 740779-740891 (+)TPP741139-741835 (+)BCA_0788

Aminopyrimidine aminohydrolase 		BCA_0788Operon

DOOR ID: 540015		BCA_0788,
BCA_0789,
BCA_0790,
BCA_0791,
BCA_0792 (tenI),
BCA_0793 (thiO),
BCA_0794 (thiS),
BCA_0795 (thiG),
BCA_0796,
BCA_0797 (thiD1)		 View Structure
15 740952-741055 (+)TPP741139-741835 (+)BCA_0788

Aminopyrimidine aminohydrolase 		BCA_0788Operon

DOOR ID: 540015		BCA_0788,
BCA_0789,
BCA_0790,
BCA_0791,
BCA_0792 (tenI),
BCA_0793 (thiO),
BCA_0794 (thiS),
BCA_0795 (thiG),
BCA_0796,
BCA_0797 (thiD1)		 View Structure
16 748954-749101 (+)ydaO-yuaA749194-749581 (+)BCA_0799

BCA_0799Operon

DOOR ID: 540016		BCA_0799,
BCA_0800,
BCA_0801		 View Structure
17 750089-750234 (+)ydaO-yuaA750533-752201 (+)kdpA

Potassium-transporting ATPase potassium-binding subunit (ATP phosphohydrolase [potassium-transporting] A chain) (Potassium-binding and translocating subunit A) (Potassium-translocating ATPase A chain)		BCA_0803Operon

DOOR ID: 540017		BCA_0803 (kdpA),
BCA_0804 (kdpB),
BCA_0805 (kdpC),
BCA_0806 (kdpD)		 View Structure
18 846309-846490 (-)lysine844736-846161 (-)BCA_0905

Amino acid permease family protein		BCA_0905Operon

DOOR ID: 540041		BCA_0904,
BCA_0905		 View Structure
19 1272023-1272187 (-)yybP-ykoY1271136-1271931 (-)BCA_1360

Membrane protein; TerC family		BCA_1360Single gene

DOOR ID: 2528234		BCA_1360 View Structure
20 1301826-1301869 (+)PreQ11301962-1302625 (+)BCA_1395

7-cyano-7-deazaguanine synthase (0) (7-cyano-7-carbaguanine synthase) (PreQ(0) synthase) (Queuosine biosynthesis protein QueC)		BCA_1395Operon

DOOR ID: 540126		BCA_1395,
BCA_1396,
BCA_1397 (queE),
BCA_1398		 View Structure
21 1363928-1364109 (+)lysine1364289-1365606 (+)lysA

Diaminopimelate decarboxylase (DAP decarboxylase) (DAPDC) (0)		BCA_1475Single gene

DOOR ID: 2528289		BCA_1475 (lysA) View Structure
22 1365723-1365831 (+)SAM1365903-1366047 (+)BCA_1477

BCA_1477Single gene

DOOR ID: 2528290		BCA_1477 View Structure
23 1379782-1379887 (+)SAM1379982-1381299 (+)BCA_1493

Na+/H+ antiporter family protein		BCA_1493Single gene

DOOR ID: 2528295		BCA_1493 View Structure
24 1428007-1428146 (+)FMN1428308-1428887 (+)BCA_1541

Riboflavin transporter		BCA_1541Single gene

DOOR ID: 2528326		BCA_1541 View Structure
25 1502962-1503063 (+)purine1503170-1503764 (+)xpt

Xanthine phosphoribosyltransferase (XPRTase) (2)		BCA_1628Operon

DOOR ID: 540167		BCA_1628 (xpt),
BCA_1629 (pbuX)		 View Structure
26 1517787-1517950 (+)ykoK1518295-1519021 (+)BCA_1645

Putative cation transporter		BCA_1645Single gene

DOOR ID: 2528362		BCA_1645 View Structure
27 1539879-1539923 (+)PreQ11539929-1540415 (+)BCA_1656

BCA_1656Single gene

DOOR ID: 2528369		BCA_1656 View Structure
28 1685893-1686079 (-)lysine1684463-1685693 (-)dapG1

Aspartokinase 		BCA_1819Single gene

DOOR ID: 2528432		BCA_1819 (dapG1) View Structure
29 1804480-1804626 (+)ydaO-yuaA1804771-1806598 (+)BCA_1954

Putative membrane protein		BCA_1954Single gene

DOOR ID: 2528486		BCA_1954 View Structure
30 2284422-2284541 (-)glycine2282946-2284314 (-)BCA_2448

Sodium/alanine symporter family protein		BCA_2448Single gene

DOOR ID: 2528736		BCA_2448 View Structure
31 2520219-2520324 (+)TPP2520420-2521137 (+)tenA

Aminopyrimidine aminohydrolase 		BCA_2702Single gene

DOOR ID: 2528891		BCA_2702 (tenA) View Structure
32 2547623-2547738 (+)SAM2547877-2548426 (+)BCA_2731

BCA_2731Operon

DOOR ID: 540346		BCA_2731,
BCA_2732,
BCA_2733		 View Structure
33 2914389-2914581 (+)lysine2914693-2916160 (+)lysP

Lysine-specific permease		BCA_3141Single gene

DOOR ID: 2529109		BCA_3141 (lysP) View Structure
34 3014980-3015081 (-)SAM3013687-3014893 (-)BCA_3241

Peptidase M20 domain-containing protein 2		BCA_3241Single gene

DOOR ID: 2529160		BCA_3241 View Structure
35 3175186-3175284 (-)SAM3174827-3175085 (-)BCA_3396

BCA_3396Single gene

DOOR ID: 2529254		BCA_3396 View Structure
36 3222124-3222265 (+)ydaO-yuaA3222362-3222506 (+)BCA_3449

BCA_3449Single gene

DOOR ID: 2529282		BCA_3449 View Structure
37 3650030-3650131 (-)purine3649070-3649796 (-)BCA_3889

Transcriptional regulator; GntR family		BCA_3889Single gene

DOOR ID: 2529520		BCA_3889 View Structure
38 3863301-3863489 (+)cobalamin3863616-3865905 (+)metE

5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (4) (Cobalamin-independent methionine synthase) (Methionine synthase; vitamin-B12 independent isozyme)		BCA_4112Single gene

DOOR ID: 2529594		BCA_4112 (metE) View Structure
39 3894259-3894400 (-)SAM3892986-3894168 (-)mtnK

Methylthioribose kinase (MTR kinase) (00)		BCA_4144Operon

DOOR ID: 540604		BCA_4143 (mtnA),
BCA_4144 (mtnK)		 View Structure
40 3896594-3896701 (+)SAM3896765-3898010 (+)mtnW

2;3-diketo-5-methylthiopentyl-1-phosphate enolase (DK-MTP-1-P enolase) (RuBisCO-like protein) (RLP)		BCA_4149Operon

DOOR ID: 540605		BCA_4149 (mtnW),
BCA_4150 (mtnX),
BCA_4151 (mtnB),
BCA_4152		 View Structure
41 3957611-3957754 (+)FMN3958065-3959178 (+)ribD

Riboflavin biosynthesis protein RibD [Includes: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (DRAP deaminase) (93) (HTP reductase)]		BCA_4222Operon

DOOR ID: 540615		BCA_4222 (ribD),
BCA_4223 (ribE),
BCA_4224 (ribBA),
BCA_4225 (ribH)		 View Structure
42 3967154-3967216 (-)glutamine3965685-3966414 (-)bioD

ATP-dependent dethiobiotin synthetase BioD (DTB synthetase) (DTBS) (Dethiobiotin synthase)		BCA_4231Operon

DOOR ID: 540616		BCA_4227 (bioB),
BCA_4228,
BCA_4229,
BCA_4230 (bioF),
BCA_4231 (bioD),
BCA_4232 (bioA)		 View Structure
43 4078458-4078567 (-)SAM4076554-4078387 (-)BCA_4364

Homocysteine S-methyltransferase domain protein/methylenetetrahydrofolate reductase family protein		BCA_4364Operon

DOOR ID: 540641		BCA_4362 (murG2),
BCA_4363 (metH),
BCA_4364		 View Structure
44 4078770-4078879 (+)SAM4078973-4080086 (+)metI

Cystathionine gamma-synthase/O-acetylhomoserine thiolyase		BCA_4367Operon

DOOR ID: 540642		BCA_4367 (metI),
BCA_4368		 View Structure
45 4562947-4563068 (-)SAM4561577-4562777 (-)metK

S-adenosylmethionine synthase (AdoMet synthase) (MAT) (Methionine adenosyltransferase)		BCA_4891Single gene

DOOR ID: 2529923		BCA_4891 (metK) View Structure
46 4604972-4605073 (+)TPP4605159-4605828 (+)BCA_4951

Probable proton-coupled thiamine transporter YuaJ		BCA_4951Single gene

DOOR ID: 2529953		BCA_4951 View Structure
47 4762009-4762116 (-)SAM4760683-4761709 (-)BCA_5120

Methionine import ATP-binding protein MetN 		BCA_5120Operon

DOOR ID: 540798		BCA_5117,
BCA_5118,
BCA_5119,
BCA_5120		 View Structure
48 4853207-4853266 (+)fluoride4853290-4853725 (+)BCA_5221

Putative fluoride ion transporter CrcB		BCA_5221Operon

DOOR ID: 540822		BCA_5221,
BCA_5222		 View Structure
49 4985418-4985533 (-)TPP4983544-4985305 (-)thiC

Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)		BCA_5363Single gene

DOOR ID: 2530126		BCA_5363 (thiC) View Structure
50 5183738-5183843 (-)SAM5182346-5183645 (-)BCA_5558

O-acetylhomoserine/O-acetylserine sulfhydrylase		BCA_5558Operon

DOOR ID: 540887		BCA_5557 (metA),
BCA_5558		 View Structure