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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
79233-79323
(-)
glycine
77647-78925 (-)
glyA
JTY_0072
Operon
DOOR ID:
533856
JTY_0071
(sdaA)
,
JTY_0072
(glyA)
View Structure
2
308049-308222
(-)
cobalamin
306240-307911 (-)
PPE2
JTY_0263
Operon
DOOR ID:
533896
JTY_0261
(cobU)
,
JTY_0262
(cobQ1)
,
JTY_0263
(PPE2)
View Structure
3
502195-502305
(+)
TPP
503314-503521 (+)
thiS
JTY_0425
Operon
DOOR ID:
533929
JTY_0424
(thiO)
,
JTY_0425
(thiS)
,
JTY_0426
(thiG)
View Structure
4
511364-511474
(-)
TPP
508905-509703 (-)
thiD
JTY_0431
Operon
DOOR ID:
533930
JTY_0430,
JTY_0431
(thiD)
,
JTY_0432
(thiC)
View Structure
5
967713-967935
(-)
ydaO-yuaA
966479-967703 (-)
rpfA
JTY_0889
Single gene
DOOR ID:
2517045
JTY_0889
(rpfA)
View Structure
6
1264232-1264450
(-)
cobalamin
1261819-1264099 (-)
metE
JTY_1167
Single gene
DOOR ID:
2517152
JTY_1167
(metE)
View Structure
7
1720743-1720912
(+)
ykoK
1721209-1721446 (+)
JTY_1562
JTY_1562
Single gene
DOOR ID:
2517301
JTY_1562
View Structure
8
2030588-2030762
(+)
ykoK
2031064-2031364 (+)
PE20
JTY_1823
Operon
DOOR ID:
534244
JTY_1823
(PE20)
,
JTY_1824
(PPE31)
View Structure
9
2058559-2058656
(+)
glycine
2058822-2061648 (+)
gcvB
Glycine dehydrogenase (decarboxylating) (Glycine cleavage system P-protein) (Glycine decarboxylase) (Glycine dehydrogenase (aminomethyl-transferring))
JTY_1851
Operon
DOOR ID:
534249
JTY_1849,
JTY_1850,
JTY_1851
(gcvB)
View Structure
10
3715168-3715287
(+)
SAM-IV
3715323-3716673 (+)
metC
JTY_3410
Operon
DOOR ID:
534605
JTY_3410
(metC)
,
JTY_3411
(metX)
,
JTY_3412
View Structure
Genome:
Mycobacterium bovis BCG str. Tokyo 172
(
NC_012207.1
);
Phylum:
Actinobacteria
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