Genome: Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594 (NC_012125.1); Phylum: Gammaproteobacteria
S.No.Riboswitch Location and StrandRiboswitch classDownstream gene location and StrandDownstream gene name/gene product descriptionLocus_tag of downstream geneSingle gene/within operon (According to DOOR database)Operon details (List of genes within operon and their Locus_tag)Predicted Structure
1 120722-120821 (-)TPP119706-120690 (-)tbpA

Thiamine-binding periplasmic protein

DOOR ID: 532976
SPC_0113 (thiQ),
SPC_0114 (thiP),
SPC_0115 (tbpA)
View Structure
2 847673-847817 (+)MOCO848815-849328 (+)moaB

Molybdenum cofactor biosynthesis protein B

DOOR ID: 533117
SPC_0799 (moaA),
SPC_0800 (moaB),
SPC_0801 (moaC),
SPC_0802 (moaD),
SPC_0803 (moaE),
SPC_0804 (ybhL)
View Structure
3 1628720-1628816 (+)TPP1628847-1629645 (+)thiM

Hydroxyethylthiazole kinase (0) (4-methyl-5-beta-hydroxyethylthiazole kinase) (TH kinase) (Thz kinase)

DOOR ID: 533264
SPC_1556 (thiM),
SPC_1557 (thiD),
SPC_1558 (yegW)
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4 1757852-1758027 (+)cobalamin1758123-1759503 (+)cbiA

Cobyrinate a;c-diamide synthase (1) (Cobyrinic acid a;c-diamide synthetase)

DOOR ID: 533278
SPC_1680 (cbiA),
SPC_1681 (cbiB),
SPC_1682 (cbiC),
SPC_1683 (cbiD),
SPC_1684 (cbiE),
SPC_1685 (cbiT),
SPC_1686 (cbiF),
SPC_1687 (cbiG),
SPC_1688 (cbiH),
SPC_1689 (cbiJ),
SPC_1690 (cbiK),
SPC_1691 (cbiL),
SPC_1692 (cbiM),
SPC_1693 (cbiN),
SPC_1694 (cbiQ),
SPC_1695 (cbiO),
SPC_1696 (cbiP),
SPC_1697 (cobU),
SPC_1698 (cobS),
SPC_1699 (cobT)
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5 1944779-1944880 (-)yybP-ykoY1944100-1944721 (-)yebN

Probable manganese efflux pump MntP
SPC_1895Single gene

DOOR ID: 2515561
SPC_1895 (yebN) View Structure
6 3298905-3299103 (-)FMN3298145-3298799 (-)ribB

3;4-dihydroxy-2-butanone 4-phosphate synthase (DHBP synthase) (2)
SPC_3271Single gene

DOOR ID: 2516163
SPC_3271 (ribB) View Structure
7 4062498-4062661 (-)TPP4060516-4062412 (-)thiC

Phosphomethylpyrimidine synthase (7) (Hydroxymethylpyrimidine phosphate synthase) (HMP-P synthase) (HMP-phosphate synthase) (HMPP synthase) (Thiamine biosynthesis protein ThiC)

DOOR ID: 533693
SPC_3990 (thiH),
SPC_3991 (thiG),
SPC_3993 (thiF),
SPC_3994 (thiE),
SPC_3995 (thiC)
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8 4321570-4321763 (+)cobalamin4321828-4323673 (+)btuB

Vitamin B12 transporter BtuB (Cobalamin receptor) (Outer membrane cobalamin translocator)

DOOR ID: 533747
SPC_4238 (btuB),
SPC_4239 (murI)
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9 4593455-4593499 (+)mini-ykkC4593520-4593838 (+)sugE

SPC_4488Single gene

DOOR ID: 2516613
SPC_4488 (sugE) View Structure