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S.No.
Riboswitch Location and Strand
Riboswitch class
Downstream gene location and Strand
Downstream gene name/gene product description
Locus_tag of downstream gene
Single gene/within operon (According to DOOR database)
Operon details (List of genes within operon and their Locus_tag)
Predicted Structure
1
401257-401400
(+)
cobalamin
401678-402986 (+)
Chy400_0336
Chy400_0336
Operon
DOOR ID:
1180450
Chy400_0340,
Chy400_0339,
Chy400_0338,
Chy400_0337,
Chy400_0336
View Structure
2
429603-429664
(+)
fluoride
429714-431241 (+)
Chy400_0365
Chy400_0365
Operon
DOOR ID:
1180457
Chy400_0366,
Chy400_0365
View Structure
3
474439-474561
(-)
TPP
473524-474334 (-)
Chy400_0401
Hydroxyethylthiazole kinase (0) (4-methyl-5-beta-hydroxyethylthiazole kinase) (TH kinase) (Thz kinase)
Chy400_0401
Operon
DOOR ID:
1180464
Chy400_0401,
Chy400_0400,
Chy400_0399
View Structure
4
554487-554602
(-)
TPP
554112-554406 (-)
Chy400_0456
Chy400_0456
Operon
DOOR ID:
1180477
Chy400_0456,
Chy400_0455,
Chy400_0454
View Structure
5
586882-587050
(-)
ykoK
586654-586882 (-)
Chy400_0492
Chy400_0492
Single gene
DOOR ID:
2509284
Chy400_0492
View Structure
6
599398-599598
(+)
glmS
599749-601612 (+)
Chy400_0502
Chy400_0502
Single gene
DOOR ID:
2509288
Chy400_0502
View Structure
7
1087117-1087230
(-)
TPP
1085727-1087029 (-)
Chy400_0859
Chy400_0859
Operon
DOOR ID:
1180555
Chy400_0857,
Chy400_0858,
Chy400_0859
View Structure
8
1089196-1089295
(+)
TPP
1089389-1090046 (+)
Chy400_0862
Chy400_0862
Single gene
DOOR ID:
2509435
Chy400_0862
View Structure
9
1111680-1111804
(+)
FMN
1111959-1112766 (+)
Chy400_0882
Chy400_0882
Operon
DOOR ID:
1180559
Chy400_0882,
Chy400_0883
View Structure
10
1681663-1681787
(-)
cobalamin
1680465-1681521 (-)
Chy400_1314
Chy400_1314
Operon
DOOR ID:
1180645
Chy400_1310,
Chy400_1311,
Chy400_1312,
Chy400_1313,
Chy400_1314
View Structure
11
2012267-2012373
(-)
SAM
2010995-2012192 (-)
Chy400_1581
Chy400_1581
Operon
DOOR ID:
1180699
Chy400_1578,
Chy400_1579,
Chy400_1580,
Chy400_1581
View Structure
12
2992784-2992916
(+)
FMN
2993067-2994243 (+)
Chy400_2370
Chy400_2370
Operon
DOOR ID:
1180852
Chy400_2370,
Chy400_2371,
Chy400_2372,
Chy400_2373
(ribH)
View Structure
13
3436180-3436325
(-)
cobalamin
3435445-3436054 (-)
Chy400_2789
Chy400_2789
Operon
DOOR ID:
1180927
Chy400_2785,
Chy400_2786,
Chy400_2787,
Chy400_2788,
Chy400_2789
View Structure
14
4079311-4079417
(-)
SAM
4078208-4079252 (-)
Chy400_3271
Methylthioribose-1-phosphate isomerase (M1Pi) (MTR-1-P isomerase) (3) (S-methyl-5-thioribose-1-phosphate isomerase)
Chy400_3271
Operon
DOOR ID:
1181025
Chy400_3270,
Chy400_3271
View Structure
15
4661646-4661757
(+)
SAM
4661858-4663154 (+)
Chy400_3740
Chy400_3740
Operon
DOOR ID:
1181126
Chy400_3740,
Chy400_3741
View Structure
Genome:
Chloroflexus sp. Y-400-fl
(
NC_012032.1
);
Phylum:
Chloroflexi
a:16:{i:0;a:18:{i:0;s:5:"S.No.";i:1;s:9:"Genome_ID";i:2;s:11:"Genome_Name";i:3;s:13:"Taxonomy_name";i:4;s:6:"Tax_ID";i:5;s:19:"Riboswitch_Location";i:6;s:17:"Riboswitch_strand";i:7;s:16:"Riboswitch_class";i:8;s:14:"Tandem_Aptamer";i:9;s:24:"Downstream_gene_location";i:10;s:11:"Gene_Strand";i:11;s:20:"Downstream_gene_name";i:12;s:24:"Gene_product_description";i:13;s:9:"Locus_tag";i:14;s:25:"Single_gene/within_operon";i:15;s:9:"Operon_ID";i:16;s:14:"Operon_details";i:17;s:22:"Biological_process[GO]";}i:1;a:19:{i:0;i:1;i:1;s:11:"NC_012032.1";i:2;s:26:"Chloroflexus sp. Y-400-fl ";i:3;s:11:"Chloroflexi";i:4;s:6:"200795";i:5;s:13:"401257-401400";i:6;s:1:"+";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:13:"401678-402986";i:10;s:1:"+";i:11;s:11:"Chy400_0336";i:12;s:0:"";i:13;s:11:"Chy400_0336";i:14;s:6:"Operon";i:15;s:7:"1180450";i:16;s:59:"Chy400_0340;Chy400_0339;Chy400_0338;Chy400_0337;Chy400_0336";i:17;s:0:"";i:18;s:15:"View Structure ";}i:2;a:19:{i:0;i:2;i:1;s:11:"NC_012032.1";i:2;s:26:"Chloroflexus sp. Y-400-fl ";i:3;s:11:"Chloroflexi";i:4;s:6:"200795";i:5;s:13:"429603-429664";i:6;s:1:"+";i:7;s:8:"fluoride";i:8;s:0:"";i:9;s:13:"429714-431241";i:10;s:1:"+";i:11;s:11:"Chy400_0365";i:12;s:0:"";i:13;s:11:"Chy400_0365";i:14;s:6:"Operon";i:15;s:7:"1180457";i:16;s:23:"Chy400_0366;Chy400_0365";i:17;s:0:"";i:18;s:15:"View Structure ";}i:3;a:19:{i:0;i:3;i:1;s:11:"NC_012032.1";i:2;s:26:"Chloroflexus sp. Y-400-fl ";i:3;s:11:"Chloroflexi";i:4;s:6:"200795";i:5;s:13:"474439-474561";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:13:"473524-474334";i:10;s:1:"-";i:11;s:11:"Chy400_0401";i:12;s:102:"Hydroxyethylthiazole kinase (0) (4-methyl-5-beta-hydroxyethylthiazole kinase) (TH kinase) (Thz kinase)";i:13;s:11:"Chy400_0401";i:14;s:6:"Operon";i:15;s:7:"1180464";i:16;s:35:"Chy400_0401;Chy400_0400;Chy400_0399";i:17;s:98:"thiamine biosynthetic process [GO:0009228]; thiamine diphosphate biosynthetic process [GO:0009229]";i:18;s:15:"View Structure ";}i:4;a:19:{i:0;i:4;i:1;s:11:"NC_012032.1";i:2;s:26:"Chloroflexus sp. Y-400-fl ";i:3;s:11:"Chloroflexi";i:4;s:6:"200795";i:5;s:13:"554487-554602";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:13:"554112-554406";i:10;s:1:"-";i:11;s:11:"Chy400_0456";i:12;s:0:"";i:13;s:11:"Chy400_0456";i:14;s:6:"Operon";i:15;s:7:"1180477";i:16;s:35:"Chy400_0456;Chy400_0455;Chy400_0454";i:17;s:0:"";i:18;s:15:"View Structure ";}i:5;a:19:{i:0;i:5;i:1;s:11:"NC_012032.1";i:2;s:26:"Chloroflexus sp. Y-400-fl ";i:3;s:11:"Chloroflexi";i:4;s:6:"200795";i:5;s:13:"586882-587050";i:6;s:1:"-";i:7;s:4:"ykoK";i:8;s:0:"";i:9;s:13:"586654-586882";i:10;s:1:"-";i:11;s:11:"Chy400_0492";i:12;s:0:"";i:13;s:11:"Chy400_0492";i:14;s:11:"Single gene";i:15;s:7:"2509284";i:16;s:11:"Chy400_0492";i:17;s:0:"";i:18;s:15:"View Structure ";}i:6;a:19:{i:0;i:6;i:1;s:11:"NC_012032.1";i:2;s:26:"Chloroflexus sp. Y-400-fl ";i:3;s:11:"Chloroflexi";i:4;s:6:"200795";i:5;s:13:"599398-599598";i:6;s:1:"+";i:7;s:4:"glmS";i:8;s:0:"";i:9;s:13:"599749-601612";i:10;s:1:"+";i:11;s:11:"Chy400_0502";i:12;s:0:"";i:13;s:11:"Chy400_0502";i:14;s:11:"Single gene";i:15;s:7:"2509288";i:16;s:11:"Chy400_0502";i:17;s:0:"";i:18;s:15:"View Structure ";}i:7;a:19:{i:0;i:7;i:1;s:11:"NC_012032.1";i:2;s:26:"Chloroflexus sp. Y-400-fl ";i:3;s:11:"Chloroflexi";i:4;s:6:"200795";i:5;s:15:"1087117-1087230";i:6;s:1:"-";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"1085727-1087029";i:10;s:1:"-";i:11;s:11:"Chy400_0859";i:12;s:0:"";i:13;s:11:"Chy400_0859";i:14;s:6:"Operon";i:15;s:7:"1180555";i:16;s:35:"Chy400_0857;Chy400_0858;Chy400_0859";i:17;s:0:"";i:18;s:15:"View Structure ";}i:8;a:19:{i:0;i:8;i:1;s:11:"NC_012032.1";i:2;s:26:"Chloroflexus sp. Y-400-fl ";i:3;s:11:"Chloroflexi";i:4;s:6:"200795";i:5;s:15:"1089196-1089295";i:6;s:1:"+";i:7;s:3:"TPP";i:8;s:0:"";i:9;s:15:"1089389-1090046";i:10;s:1:"+";i:11;s:11:"Chy400_0862";i:12;s:0:"";i:13;s:11:"Chy400_0862";i:14;s:11:"Single gene";i:15;s:7:"2509435";i:16;s:11:"Chy400_0862";i:17;s:0:"";i:18;s:15:"View Structure ";}i:9;a:19:{i:0;i:9;i:1;s:11:"NC_012032.1";i:2;s:26:"Chloroflexus sp. Y-400-fl ";i:3;s:11:"Chloroflexi";i:4;s:6:"200795";i:5;s:15:"1111680-1111804";i:6;s:1:"+";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"1111959-1112766";i:10;s:1:"+";i:11;s:11:"Chy400_0882";i:12;s:0:"";i:13;s:11:"Chy400_0882";i:14;s:6:"Operon";i:15;s:7:"1180559";i:16;s:23:"Chy400_0882;Chy400_0883";i:17;s:0:"";i:18;s:15:"View Structure ";}i:10;a:19:{i:0;i:10;i:1;s:11:"NC_012032.1";i:2;s:26:"Chloroflexus sp. Y-400-fl ";i:3;s:11:"Chloroflexi";i:4;s:6:"200795";i:5;s:15:"1681663-1681787";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"1680465-1681521";i:10;s:1:"-";i:11;s:11:"Chy400_1314";i:12;s:0:"";i:13;s:11:"Chy400_1314";i:14;s:6:"Operon";i:15;s:7:"1180645";i:16;s:59:"Chy400_1310;Chy400_1311;Chy400_1312;Chy400_1313;Chy400_1314";i:17;s:0:"";i:18;s:15:"View Structure ";}i:11;a:19:{i:0;i:11;i:1;s:11:"NC_012032.1";i:2;s:26:"Chloroflexus sp. Y-400-fl ";i:3;s:11:"Chloroflexi";i:4;s:6:"200795";i:5;s:15:"2012267-2012373";i:6;s:1:"-";i:7;s:3:"SAM";i:8;s:0:"";i:9;s:15:"2010995-2012192";i:10;s:1:"-";i:11;s:11:"Chy400_1581";i:12;s:0:"";i:13;s:11:"Chy400_1581";i:14;s:6:"Operon";i:15;s:7:"1180699";i:16;s:47:"Chy400_1578;Chy400_1579;Chy400_1580;Chy400_1581";i:17;s:0:"";i:18;s:15:"View Structure ";}i:12;a:19:{i:0;i:12;i:1;s:11:"NC_012032.1";i:2;s:26:"Chloroflexus sp. Y-400-fl ";i:3;s:11:"Chloroflexi";i:4;s:6:"200795";i:5;s:15:"2992784-2992916";i:6;s:1:"+";i:7;s:3:"FMN";i:8;s:0:"";i:9;s:15:"2993067-2994243";i:10;s:1:"+";i:11;s:11:"Chy400_2370";i:12;s:0:"";i:13;s:11:"Chy400_2370";i:14;s:6:"Operon";i:15;s:7:"1180852";i:16;s:53:"Chy400_2370;Chy400_2371;Chy400_2372;Chy400_2373(ribH)";i:17;s:0:"";i:18;s:15:"View Structure ";}i:13;a:19:{i:0;i:13;i:1;s:11:"NC_012032.1";i:2;s:26:"Chloroflexus sp. Y-400-fl ";i:3;s:11:"Chloroflexi";i:4;s:6:"200795";i:5;s:15:"3436180-3436325";i:6;s:1:"-";i:7;s:9:"cobalamin";i:8;s:0:"";i:9;s:15:"3435445-3436054";i:10;s:1:"-";i:11;s:11:"Chy400_2789";i:12;s:0:"";i:13;s:11:"Chy400_2789";i:14;s:6:"Operon";i:15;s:7:"1180927";i:16;s:59:"Chy400_2785;Chy400_2786;Chy400_2787;Chy400_2788;Chy400_2789";i:17;s:0:"";i:18;s:15:"View Structure ";}i:14;a:19:{i:0;i:14;i:1;s:11:"NC_012032.1";i:2;s:26:"Chloroflexus sp. Y-400-fl ";i:3;s:11:"Chloroflexi";i:4;s:6:"200795";i:5;s:15:"4079311-4079417";i:6;s:1:"-";i:7;s:3:"SAM";i:8;s:0:"";i:9;s:15:"4078208-4079252";i:10;s:1:"-";i:11;s:11:"Chy400_3271";i:12;s:115:"Methylthioribose-1-phosphate isomerase (M1Pi) (MTR-1-P isomerase) (3) (S-methyl-5-thioribose-1-phosphate isomerase)";i:13;s:11:"Chy400_3271";i:14;s:6:"Operon";i:15;s:7:"1181025";i:16;s:23:"Chy400_3270;Chy400_3271";i:17;s:58:"L-methionine salvage from methylthioadenosine [GO:0019509]";i:18;s:15:"View Structure ";}i:15;a:19:{i:0;i:15;i:1;s:11:"NC_012032.1";i:2;s:26:"Chloroflexus sp. Y-400-fl ";i:3;s:11:"Chloroflexi";i:4;s:6:"200795";i:5;s:15:"4661646-4661757";i:6;s:1:"+";i:7;s:3:"SAM";i:8;s:0:"";i:9;s:15:"4661858-4663154";i:10;s:1:"+";i:11;s:11:"Chy400_3740";i:12;s:0:"";i:13;s:11:"Chy400_3740";i:14;s:6:"Operon";i:15;s:7:"1181126";i:16;s:23:"Chy400_3740;Chy400_3741";i:17;s:0:"";i:18;s:15:"View Structure ";}}